Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotides Xcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotides Xcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotides
Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221
Xcc-8004.4275.1
Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761
Xcc-8004.4276.1
Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628
Xcc-8004.4277.1
Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515
Xcc-8004.4278.1
Position (kb) 4093
4094 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4092.277 kb on + strand at 4092.277 kb on + strand at 4092.278 kb on - strand at 4092.278 kb on - strand at 4092.278 kb on - strand at 4092.282 kb on + strand at 4092.283 kb on - strand at 4092.419 kb on + strand, within Xcc-8004.4275.1 at 4092.419 kb on + strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.420 kb on - strand, within Xcc-8004.4275.1 at 4092.503 kb on + strand, within Xcc-8004.4275.1 at 4092.504 kb on - strand, within Xcc-8004.4275.1 at 4092.504 kb on - strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.712 kb on + strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.713 kb on - strand, within Xcc-8004.4275.1 at 4092.752 kb on - strand, within Xcc-8004.4275.1 at 4092.796 kb on + strand, within Xcc-8004.4275.1 at 4093.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,092,277 + +0.4 4,092,277 + +1.2 4,092,278 - -1.2 4,092,278 - -0.2 4,092,278 - -1.0 4,092,282 + -1.3 4,092,283 - +0.2 4,092,419 + Xcc-8004.4275.1 0.18 -1.6 4,092,419 + Xcc-8004.4275.1 0.18 +0.1 4,092,420 - Xcc-8004.4275.1 0.18 -0.1 4,092,420 - Xcc-8004.4275.1 0.18 +2.8 4,092,420 - Xcc-8004.4275.1 0.18 +1.3 4,092,503 + Xcc-8004.4275.1 0.27 -3.1 4,092,504 - Xcc-8004.4275.1 0.27 -0.9 4,092,504 - Xcc-8004.4275.1 0.27 +0.8 4,092,712 + Xcc-8004.4275.1 0.48 -1.8 4,092,712 + Xcc-8004.4275.1 0.48 +1.4 4,092,712 + Xcc-8004.4275.1 0.48 -1.3 4,092,712 + Xcc-8004.4275.1 0.48 +0.4 4,092,712 + Xcc-8004.4275.1 0.48 +0.3 4,092,712 + Xcc-8004.4275.1 0.48 +1.0 4,092,712 + Xcc-8004.4275.1 0.48 -1.2 4,092,713 - Xcc-8004.4275.1 0.48 +0.9 4,092,713 - Xcc-8004.4275.1 0.48 -0.1 4,092,713 - Xcc-8004.4275.1 0.48 -3.2 4,092,752 - Xcc-8004.4275.1 0.52 -0.2 4,092,796 + Xcc-8004.4275.1 0.57 +1.0 4,093,798 + +0.8
Or see this region's nucleotide sequence