Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4070.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4068.1 and Xcc-8004.4069.1 are separated by 99 nucleotidesXcc-8004.4069.1 and Xcc-8004.4070.1 are separated by 123 nucleotidesXcc-8004.4070.1 and Xcc-8004.4071.1 are separated by 114 nucleotidesXcc-8004.4071.1 and Xcc-8004.4072.1 are separated by 235 nucleotides Xcc-8004.4068.1: Xcc-8004.4068.1 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 3,925,460 to 3,926,203 Xcc-8004.4068.1 Xcc-8004.4069.1: Xcc-8004.4069.1 - FIG01211525: hypothetical protein, at 3,926,303 to 3,926,731 Xcc-8004.4069.1 Xcc-8004.4070.1: Xcc-8004.4070.1 - peptidyl-Asp metalloendopeptidase, at 3,926,855 to 3,928,108 Xcc-8004.4070.1 Xcc-8004.4071.1: Xcc-8004.4071.1 - hypothetical protein, at 3,928,223 to 3,928,480 Xcc-8004.4071.1 Xcc-8004.4072.1: Xcc-8004.4072.1 - COG2833: uncharacterized protein, at 3,928,716 to 3,929,564 Xcc-8004.4072.1 Position (kb) 3926 3927 3928 3929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3926.207 kb on - strandat 3926.207 kb on - strandat 3926.207 kb on - strandat 3926.275 kb on + strandat 3926.275 kb on + strandat 3926.275 kb on + strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.276 kb on - strandat 3926.331 kb on + strandat 3926.331 kb on + strandat 3926.332 kb on - strandat 3926.332 kb on - strandat 3926.361 kb on + strand, within Xcc-8004.4069.1at 3926.361 kb on + strand, within Xcc-8004.4069.1at 3926.361 kb on + strand, within Xcc-8004.4069.1at 3926.480 kb on + strand, within Xcc-8004.4069.1at 3926.481 kb on - strand, within Xcc-8004.4069.1at 3926.780 kb on + strandat 3926.780 kb on + strandat 3926.781 kb on - strandat 3926.808 kb on + strandat 3926.808 kb on + strandat 3926.808 kb on + strandat 3926.808 kb on + strandat 3926.809 kb on - strandat 3926.809 kb on - strandat 3926.809 kb on - strandat 3926.809 kb on - strandat 3926.943 kb on + strandat 3926.944 kb on - strandat 3926.967 kb on + strandat 3926.968 kb on - strandat 3926.968 kb on - strandat 3926.968 kb on - strandat 3927.000 kb on + strand, within Xcc-8004.4070.1at 3927.001 kb on - strand, within Xcc-8004.4070.1at 3927.001 kb on - strand, within Xcc-8004.4070.1at 3927.001 kb on - strand, within Xcc-8004.4070.1at 3927.130 kb on - strand, within Xcc-8004.4070.1at 3927.130 kb on - strand, within Xcc-8004.4070.1at 3927.130 kb on - strand, within Xcc-8004.4070.1at 3927.132 kb on + strand, within Xcc-8004.4070.1at 3927.154 kb on - strand, within Xcc-8004.4070.1at 3927.154 kb on - strand, within Xcc-8004.4070.1at 3927.210 kb on + strand, within Xcc-8004.4070.1at 3927.211 kb on - strand, within Xcc-8004.4070.1at 3927.211 kb on - strand, within Xcc-8004.4070.1at 3927.211 kb on - strand, within Xcc-8004.4070.1at 3927.211 kb on - strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.252 kb on + strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.253 kb on - strand, within Xcc-8004.4070.1at 3927.285 kb on + strand, within Xcc-8004.4070.1at 3927.286 kb on - strand, within Xcc-8004.4070.1at 3927.345 kb on + strand, within Xcc-8004.4070.1at 3927.345 kb on + strand, within Xcc-8004.4070.1at 3927.345 kb on + strand, within Xcc-8004.4070.1at 3927.346 kb on - strand, within Xcc-8004.4070.1at 3927.346 kb on - strand, within Xcc-8004.4070.1at 3927.360 kb on + strand, within Xcc-8004.4070.1at 3927.361 kb on - strand, within Xcc-8004.4070.1at 3927.361 kb on - strand, within Xcc-8004.4070.1at 3927.402 kb on + strand, within Xcc-8004.4070.1at 3927.402 kb on + strand, within Xcc-8004.4070.1at 3927.402 kb on + strand, within Xcc-8004.4070.1at 3927.403 kb on - strand, within Xcc-8004.4070.1at 3927.403 kb on - strand, within Xcc-8004.4070.1at 3927.583 kb on - strand, within Xcc-8004.4070.1at 3927.869 kb on + strand, within Xcc-8004.4070.1at 3927.869 kb on + strand, within Xcc-8004.4070.1at 3927.870 kb on - strand, within Xcc-8004.4070.1at 3927.954 kb on - strand, within Xcc-8004.4070.1at 3927.963 kb on - strand, within Xcc-8004.4070.1at 3927.963 kb on - strand, within Xcc-8004.4070.1at 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.123 kb on - strandat 3928.178 kb on - strandat 3928.211 kb on + strandat 3928.212 kb on - strandat 3928.225 kb on - strandat 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.448 kb on - strand, within Xcc-8004.4071.1at 3928.461 kb on - strandat 3928.514 kb on - strandat 3928.594 kb on + strandat 3928.594 kb on + strandat 3928.615 kb on + strandat 3928.616 kb on - strandat 3928.686 kb on + strandat 3928.687 kb on - strandat 3928.816 kb on + strand, within Xcc-8004.4072.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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3,926,207 - -1.7
3,926,207 - +1.5
3,926,207 - +1.1
3,926,275 + +0.2
3,926,275 + -0.5
3,926,275 + +1.5
3,926,276 - -2.2
3,926,276 - -0.7
3,926,276 - +0.8
3,926,276 - -0.1
3,926,276 - -1.5
3,926,276 - -0.5
3,926,276 - +1.2
3,926,331 + +0.1
3,926,331 + +2.8
3,926,332 - +2.1
3,926,332 - +0.3
3,926,361 + Xcc-8004.4069.1 0.14 +0.2
3,926,361 + Xcc-8004.4069.1 0.14 -0.8
3,926,361 + Xcc-8004.4069.1 0.14 +1.0
3,926,480 + Xcc-8004.4069.1 0.41 -0.6
3,926,481 - Xcc-8004.4069.1 0.41 -0.1
3,926,780 + -1.5
3,926,780 + +1.1
3,926,781 - -0.3
3,926,808 + +1.9
3,926,808 + -0.9
3,926,808 + -0.2
3,926,808 + -0.6
3,926,809 - -1.6
3,926,809 - -1.1
3,926,809 - -1.6
3,926,809 - +0.3
3,926,943 + +0.4
3,926,944 - +0.7
3,926,967 + -0.3
3,926,968 - +1.7
3,926,968 - -1.3
3,926,968 - +1.7
3,927,000 + Xcc-8004.4070.1 0.12 -0.4
3,927,001 - Xcc-8004.4070.1 0.12 -2.3
3,927,001 - Xcc-8004.4070.1 0.12 -2.3
3,927,001 - Xcc-8004.4070.1 0.12 +1.2
3,927,130 - Xcc-8004.4070.1 0.22 +0.7
3,927,130 - Xcc-8004.4070.1 0.22 +2.1
3,927,130 - Xcc-8004.4070.1 0.22 +0.5
3,927,132 + Xcc-8004.4070.1 0.22 -1.8
3,927,154 - Xcc-8004.4070.1 0.24 -1.2
3,927,154 - Xcc-8004.4070.1 0.24 -1.2
3,927,210 + Xcc-8004.4070.1 0.28 +0.3
3,927,211 - Xcc-8004.4070.1 0.28 -0.9
3,927,211 - Xcc-8004.4070.1 0.28 -2.8
3,927,211 - Xcc-8004.4070.1 0.28 -0.3
3,927,211 - Xcc-8004.4070.1 0.28 -0.6
3,927,252 + Xcc-8004.4070.1 0.32 -2.9
3,927,252 + Xcc-8004.4070.1 0.32 -1.5
3,927,252 + Xcc-8004.4070.1 0.32 -1.0
3,927,252 + Xcc-8004.4070.1 0.32 -1.8
3,927,252 + Xcc-8004.4070.1 0.32 -2.1
3,927,252 + Xcc-8004.4070.1 0.32 +0.1
3,927,252 + Xcc-8004.4070.1 0.32 +1.5
3,927,252 + Xcc-8004.4070.1 0.32 -1.1
3,927,253 - Xcc-8004.4070.1 0.32 -0.2
3,927,253 - Xcc-8004.4070.1 0.32 -1.0
3,927,253 - Xcc-8004.4070.1 0.32 -2.0
3,927,253 - Xcc-8004.4070.1 0.32 -0.1
3,927,253 - Xcc-8004.4070.1 0.32 -0.6
3,927,253 - Xcc-8004.4070.1 0.32 -2.0
3,927,253 - Xcc-8004.4070.1 0.32 +0.7
3,927,253 - Xcc-8004.4070.1 0.32 -1.9
3,927,285 + Xcc-8004.4070.1 0.34 -0.7
3,927,286 - Xcc-8004.4070.1 0.34 -0.1
3,927,345 + Xcc-8004.4070.1 0.39 +0.7
3,927,345 + Xcc-8004.4070.1 0.39 +0.4
3,927,345 + Xcc-8004.4070.1 0.39 +0.6
3,927,346 - Xcc-8004.4070.1 0.39 +0.1
3,927,346 - Xcc-8004.4070.1 0.39 -1.9
3,927,360 + Xcc-8004.4070.1 0.40 -3.5
3,927,361 - Xcc-8004.4070.1 0.40 -0.5
3,927,361 - Xcc-8004.4070.1 0.40 +0.4
3,927,402 + Xcc-8004.4070.1 0.44 +1.0
3,927,402 + Xcc-8004.4070.1 0.44 -1.4
3,927,402 + Xcc-8004.4070.1 0.44 +1.3
3,927,403 - Xcc-8004.4070.1 0.44 -2.2
3,927,403 - Xcc-8004.4070.1 0.44 +1.0
3,927,583 - Xcc-8004.4070.1 0.58 +1.0
3,927,869 + Xcc-8004.4070.1 0.81 +0.5
3,927,869 + Xcc-8004.4070.1 0.81 +1.2
3,927,870 - Xcc-8004.4070.1 0.81 -1.5
3,927,954 - Xcc-8004.4070.1 0.88 -1.0
3,927,963 - Xcc-8004.4070.1 0.88 +0.6
3,927,963 - Xcc-8004.4070.1 0.88 -0.3
3,928,122 + -0.8
3,928,122 + -0.0
3,928,122 + +0.6
3,928,122 + -2.5
3,928,123 - -2.4
3,928,178 - -0.3
3,928,211 + +0.1
3,928,212 - -0.6
3,928,225 - -1.5
3,928,447 + Xcc-8004.4071.1 0.87 +0.9
3,928,447 + Xcc-8004.4071.1 0.87 -1.3
3,928,447 + Xcc-8004.4071.1 0.87 -0.3
3,928,447 + Xcc-8004.4071.1 0.87 -2.1
3,928,447 + Xcc-8004.4071.1 0.87 -2.4
3,928,448 - Xcc-8004.4071.1 0.87 -0.2
3,928,461 - +0.9
3,928,514 - -0.2
3,928,594 + -1.7
3,928,594 + +0.5
3,928,615 + -0.6
3,928,616 - -0.1
3,928,686 + +0.4
3,928,687 - +2.3
3,928,816 + Xcc-8004.4072.1 0.12 -0.0

Or see this region's nucleotide sequence