Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.314.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.312.1 and Xcc-8004.314.1 are separated by 3 nucleotidesXcc-8004.314.1 and Xcc-8004.315.1 overlap by 61 nucleotidesXcc-8004.315.1 and Xcc-8004.316.1 are separated by 35 nucleotides Xcc-8004.312.1: Xcc-8004.312.1 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 300,327 to 301,370 Xcc-8004.312.1 Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034 Xcc-8004.314.1 Xcc-8004.315.1: Xcc-8004.315.1 - FIG01211941: hypothetical protein, at 303,974 to 304,363 Xcc-8004.315.1 Xcc-8004.316.1: Xcc-8004.316.1 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 304,399 to 305,595 Xcc-8004.316.1 Position (kb) 301 302 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 300.449 kb on + strand, within Xcc-8004.312.1at 300.450 kb on - strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.828 kb on + strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 300.829 kb on - strand, within Xcc-8004.312.1at 301.008 kb on + strand, within Xcc-8004.312.1at 301.008 kb on + strand, within Xcc-8004.312.1at 301.009 kb on - strand, within Xcc-8004.312.1at 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.266 kb on + strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.267 kb on - strandat 301.268 kb on + strandat 301.269 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.279 kb on - strandat 301.280 kb on + strandat 301.303 kb on - strandat 301.303 kb on - strandat 301.341 kb on + strandat 301.342 kb on - strandat 301.342 kb on - strandat 301.368 kb on + strandat 301.368 kb on + strandat 301.435 kb on + strandat 301.436 kb on - strandat 301.436 kb on - strandat 301.968 kb on + strand, within Xcc-8004.314.1at 301.968 kb on + strand, within Xcc-8004.314.1at 301.968 kb on + strand, within Xcc-8004.314.1at 301.969 kb on - strand, within Xcc-8004.314.1at 301.969 kb on - strand, within Xcc-8004.314.1at 302.036 kb on + strand, within Xcc-8004.314.1at 302.080 kb on + strand, within Xcc-8004.314.1at 302.081 kb on - strand, within Xcc-8004.314.1at 302.253 kb on + strand, within Xcc-8004.314.1at 302.360 kb on - strand, within Xcc-8004.314.1at 302.554 kb on + strand, within Xcc-8004.314.1at 302.558 kb on - strand, within Xcc-8004.314.1at 302.558 kb on - strand, within Xcc-8004.314.1at 302.558 kb on - strand, within Xcc-8004.314.1at 302.628 kb on + strand, within Xcc-8004.314.1at 302.628 kb on + strand, within Xcc-8004.314.1at 302.629 kb on - strand, within Xcc-8004.314.1at 302.784 kb on + strand, within Xcc-8004.314.1at 302.838 kb on + strand, within Xcc-8004.314.1at 302.838 kb on + strand, within Xcc-8004.314.1at 302.838 kb on + strand, within Xcc-8004.314.1at 302.838 kb on + strand, within Xcc-8004.314.1at 302.863 kb on + strand, within Xcc-8004.314.1at 302.863 kb on + strand, within Xcc-8004.314.1at 302.863 kb on + strand, within Xcc-8004.314.1at 302.864 kb on - strand, within Xcc-8004.314.1at 302.864 kb on - strand, within Xcc-8004.314.1at 303.011 kb on - strand, within Xcc-8004.314.1at 303.621 kb on - strand, within Xcc-8004.314.1at 303.726 kb on + strand, within Xcc-8004.314.1at 303.895 kb on - strandat 303.975 kb on + strandat 304.000 kb on + strandat 304.053 kb on + strand, within Xcc-8004.315.1at 304.053 kb on + strand, within Xcc-8004.315.1at 304.054 kb on - strand, within Xcc-8004.315.1at 304.054 kb on - strand, within Xcc-8004.315.1at 304.365 kb on - strandat 304.407 kb on - strandat 304.576 kb on - strand, within Xcc-8004.316.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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300,449 + Xcc-8004.312.1 0.12 +0.9
300,450 - Xcc-8004.312.1 0.12 -2.9
300,828 + Xcc-8004.312.1 0.48 -3.7
300,828 + Xcc-8004.312.1 0.48 -0.5
300,828 + Xcc-8004.312.1 0.48 -1.9
300,828 + Xcc-8004.312.1 0.48 +0.6
300,828 + Xcc-8004.312.1 0.48 +0.4
300,829 - Xcc-8004.312.1 0.48 -1.2
300,829 - Xcc-8004.312.1 0.48 -2.4
300,829 - Xcc-8004.312.1 0.48 +0.2
300,829 - Xcc-8004.312.1 0.48 -0.6
301,008 + Xcc-8004.312.1 0.65 -0.2
301,008 + Xcc-8004.312.1 0.65 +1.7
301,009 - Xcc-8004.312.1 0.65 +1.8
301,266 + +0.2
301,266 + -1.0
301,266 + -0.1
301,266 + -1.4
301,266 + +0.2
301,267 - -0.5
301,267 - +1.0
301,267 - -0.3
301,267 - -0.4
301,267 - +1.1
301,268 + -0.2
301,269 - -0.0
301,279 - +0.5
301,279 - -1.9
301,279 - -0.7
301,279 - -1.0
301,279 - -1.8
301,280 + -0.0
301,303 - -0.4
301,303 - -0.3
301,341 + -1.8
301,342 - +0.2
301,342 - -2.0
301,368 + -1.2
301,368 + +0.2
301,435 + -1.0
301,436 - -1.3
301,436 - +0.5
301,968 + Xcc-8004.314.1 0.22 +3.4
301,968 + Xcc-8004.314.1 0.22 -0.8
301,968 + Xcc-8004.314.1 0.22 +0.4
301,969 - Xcc-8004.314.1 0.22 -1.4
301,969 - Xcc-8004.314.1 0.22 -1.5
302,036 + Xcc-8004.314.1 0.25 +1.9
302,080 + Xcc-8004.314.1 0.27 -0.8
302,081 - Xcc-8004.314.1 0.27 +0.4
302,253 + Xcc-8004.314.1 0.33 -1.6
302,360 - Xcc-8004.314.1 0.37 +1.0
302,554 + Xcc-8004.314.1 0.44 -1.7
302,558 - Xcc-8004.314.1 0.44 +0.2
302,558 - Xcc-8004.314.1 0.44 +0.4
302,558 - Xcc-8004.314.1 0.44 +1.3
302,628 + Xcc-8004.314.1 0.47 -0.2
302,628 + Xcc-8004.314.1 0.47 +0.8
302,629 - Xcc-8004.314.1 0.47 +1.2
302,784 + Xcc-8004.314.1 0.53 +0.3
302,838 + Xcc-8004.314.1 0.55 -0.2
302,838 + Xcc-8004.314.1 0.55 +0.1
302,838 + Xcc-8004.314.1 0.55 +1.1
302,838 + Xcc-8004.314.1 0.55 -0.2
302,863 + Xcc-8004.314.1 0.56 -0.7
302,863 + Xcc-8004.314.1 0.56 +1.0
302,863 + Xcc-8004.314.1 0.56 -0.6
302,864 - Xcc-8004.314.1 0.56 -1.4
302,864 - Xcc-8004.314.1 0.56 +1.2
303,011 - Xcc-8004.314.1 0.62 -0.0
303,621 - Xcc-8004.314.1 0.84 +0.8
303,726 + Xcc-8004.314.1 0.88 +1.7
303,895 - -0.6
303,975 + +0.2
304,000 + -0.4
304,053 + Xcc-8004.315.1 0.20 +3.4
304,053 + Xcc-8004.315.1 0.20 +0.7
304,054 - Xcc-8004.315.1 0.21 -0.9
304,054 - Xcc-8004.315.1 0.21 -1.4
304,365 - +1.1
304,407 - +0.5
304,576 - Xcc-8004.316.1 0.15 -0.7

Or see this region's nucleotide sequence