Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2287.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2285.1 and Xcc-8004.2286.1 are separated by 101 nucleotidesXcc-8004.2286.1 and Xcc-8004.2287.1 are separated by 56 nucleotidesXcc-8004.2287.1 and Xcc-8004.2288.1 are separated by 5 nucleotides Xcc-8004.2285.1: Xcc-8004.2285.1 - Lysyl-lysine 2,3-aminomutase, at 2,236,898 to 2,237,926 Xcc-8004.2285.1 Xcc-8004.2286.1: Xcc-8004.2286.1 - Translation elongation factor P, at 2,238,028 to 2,238,594 Xcc-8004.2286.1 Xcc-8004.2287.1: Xcc-8004.2287.1 - FIG01212650: hypothetical protein, at 2,238,651 to 2,239,445 Xcc-8004.2287.1 Xcc-8004.2288.1: Xcc-8004.2288.1 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 2,239,451 to 2,240,800 Xcc-8004.2288.1 Position (kb) 2238 2239 2240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2237.900 kb on + strandat 2237.975 kb on + strandat 2238.592 kb on + strandat 2238.592 kb on + strandat 2238.593 kb on - strandat 2238.631 kb on + strandat 2238.631 kb on + strandat 2238.631 kb on + strandat 2238.632 kb on - strandat 2238.632 kb on - strandat 2238.727 kb on + strandat 2238.728 kb on - strandat 2238.911 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.954 kb on + strand, within Xcc-8004.2287.1at 2238.955 kb on - strand, within Xcc-8004.2287.1at 2239.001 kb on + strand, within Xcc-8004.2287.1at 2239.026 kb on + strand, within Xcc-8004.2287.1at 2239.192 kb on + strand, within Xcc-8004.2287.1at 2239.192 kb on + strand, within Xcc-8004.2287.1at 2239.192 kb on + strand, within Xcc-8004.2287.1at 2239.192 kb on + strand, within Xcc-8004.2287.1at 2239.192 kb on + strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.193 kb on - strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.204 kb on + strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.205 kb on - strand, within Xcc-8004.2287.1at 2239.398 kb on + strandat 2239.398 kb on + strandat 2239.399 kb on - strandat 2239.399 kb on - strandat 2239.443 kb on + strandat 2239.443 kb on + strandat 2239.443 kb on + strandat 2239.443 kb on + strandat 2239.444 kb on - strandat 2239.444 kb on - strandat 2239.444 kb on - strandat 2239.865 kb on + strand, within Xcc-8004.2288.1at 2239.895 kb on + strand, within Xcc-8004.2288.1at 2239.976 kb on + strand, within Xcc-8004.2288.1at 2239.976 kb on + strand, within Xcc-8004.2288.1at 2239.976 kb on + strand, within Xcc-8004.2288.1at 2240.057 kb on + strand, within Xcc-8004.2288.1at 2240.057 kb on + strand, within Xcc-8004.2288.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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2,237,900 + -0.5
2,237,975 + -1.1
2,238,592 + -1.1
2,238,592 + -0.2
2,238,593 - -0.3
2,238,631 + -0.1
2,238,631 + -0.6
2,238,631 + -0.2
2,238,632 - -1.6
2,238,632 - -2.1
2,238,727 + +0.3
2,238,728 - -0.7
2,238,911 + Xcc-8004.2287.1 0.33 -1.1
2,238,954 + Xcc-8004.2287.1 0.38 -2.1
2,238,954 + Xcc-8004.2287.1 0.38 +0.4
2,238,954 + Xcc-8004.2287.1 0.38 +0.3
2,238,954 + Xcc-8004.2287.1 0.38 +0.1
2,238,954 + Xcc-8004.2287.1 0.38 +0.5
2,238,954 + Xcc-8004.2287.1 0.38 +0.7
2,238,955 - Xcc-8004.2287.1 0.38 +0.5
2,239,001 + Xcc-8004.2287.1 0.44 +0.9
2,239,026 + Xcc-8004.2287.1 0.47 -2.2
2,239,192 + Xcc-8004.2287.1 0.68 +0.8
2,239,192 + Xcc-8004.2287.1 0.68 -1.4
2,239,192 + Xcc-8004.2287.1 0.68 +1.4
2,239,192 + Xcc-8004.2287.1 0.68 -0.5
2,239,192 + Xcc-8004.2287.1 0.68 +0.4
2,239,193 - Xcc-8004.2287.1 0.68 +0.3
2,239,193 - Xcc-8004.2287.1 0.68 +0.6
2,239,193 - Xcc-8004.2287.1 0.68 +0.5
2,239,193 - Xcc-8004.2287.1 0.68 +0.1
2,239,193 - Xcc-8004.2287.1 0.68 +2.0
2,239,193 - Xcc-8004.2287.1 0.68 -0.1
2,239,204 + Xcc-8004.2287.1 0.70 +3.1
2,239,204 + Xcc-8004.2287.1 0.70 -0.1
2,239,204 + Xcc-8004.2287.1 0.70 +2.2
2,239,204 + Xcc-8004.2287.1 0.70 +0.1
2,239,204 + Xcc-8004.2287.1 0.70 +0.7
2,239,204 + Xcc-8004.2287.1 0.70 -1.4
2,239,204 + Xcc-8004.2287.1 0.70 +0.0
2,239,205 - Xcc-8004.2287.1 0.70 -1.3
2,239,205 - Xcc-8004.2287.1 0.70 -0.3
2,239,205 - Xcc-8004.2287.1 0.70 -0.1
2,239,205 - Xcc-8004.2287.1 0.70 +0.3
2,239,205 - Xcc-8004.2287.1 0.70 +1.9
2,239,205 - Xcc-8004.2287.1 0.70 -0.1
2,239,205 - Xcc-8004.2287.1 0.70 +0.5
2,239,398 + -0.6
2,239,398 + -1.1
2,239,399 - +0.3
2,239,399 - +0.7
2,239,443 + +0.3
2,239,443 + -0.5
2,239,443 + -0.6
2,239,443 + +1.5
2,239,444 - -0.6
2,239,444 - -2.4
2,239,444 - +1.5
2,239,865 + Xcc-8004.2288.1 0.31 -0.4
2,239,895 + Xcc-8004.2288.1 0.33 +0.9
2,239,976 + Xcc-8004.2288.1 0.39 -0.5
2,239,976 + Xcc-8004.2288.1 0.39 -1.8
2,239,976 + Xcc-8004.2288.1 0.39 -1.1
2,240,057 + Xcc-8004.2288.1 0.45 +1.5
2,240,057 + Xcc-8004.2288.1 0.45 +0.2

Or see this region's nucleotide sequence