Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1847.1 and Xcc-8004.1848.1 are separated by 26 nucleotides Xcc-8004.1848.1 and Xcc-8004.1849.1 are separated by 3 nucleotides
Xcc-8004.1847.1: Xcc-8004.1847.1 - FIG003003: hypothetical protein, at 1,782,462 to 1,783,457
Xcc-8004.1847.1
Xcc-8004.1848.1: Xcc-8004.1848.1 - Ribonuclease E inhibitor RraA, at 1,783,484 to 1,783,984
Xcc-8004.1848.1
Xcc-8004.1849.1: Xcc-8004.1849.1 - Beta-lactamase (EC 3.5.2.6), at 1,783,988 to 1,785,346
Xcc-8004.1849.1
Position (kb) 1783
1784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.840 kb on + strand, within Xcc-8004.1847.1 at 1783.025 kb on + strand, within Xcc-8004.1847.1 at 1783.025 kb on + strand, within Xcc-8004.1847.1 at 1783.026 kb on - strand, within Xcc-8004.1847.1 at 1783.087 kb on + strand, within Xcc-8004.1847.1 at 1783.088 kb on - strand, within Xcc-8004.1847.1 at 1783.111 kb on + strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.156 kb on + strand, within Xcc-8004.1847.1 at 1783.157 kb on - strand, within Xcc-8004.1847.1 at 1783.192 kb on + strand, within Xcc-8004.1847.1 at 1783.219 kb on + strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.364 kb on + strand at 1783.365 kb on - strand at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.914 kb on - strand, within Xcc-8004.1848.1 at 1784.213 kb on + strand, within Xcc-8004.1849.1 at 1784.213 kb on + strand, within Xcc-8004.1849.1 at 1784.390 kb on + strand, within Xcc-8004.1849.1 at 1784.390 kb on + strand, within Xcc-8004.1849.1 at 1784.391 kb on - strand, within Xcc-8004.1849.1 at 1784.468 kb on + strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.487 kb on - strand, within Xcc-8004.1849.1 at 1784.574 kb on - strand, within Xcc-8004.1849.1 at 1784.618 kb on + strand, within Xcc-8004.1849.1 at 1784.618 kb on + strand, within Xcc-8004.1849.1 at 1784.619 kb on - strand, within Xcc-8004.1849.1 at 1784.619 kb on - strand, within Xcc-8004.1849.1 at 1784.799 kb on - strand, within Xcc-8004.1849.1 at 1784.799 kb on - strand, within Xcc-8004.1849.1 at 1784.799 kb on - strand, within Xcc-8004.1849.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 1,782,700 + Xcc-8004.1847.1 0.24 +0.6 1,782,700 + Xcc-8004.1847.1 0.24 +0.4 1,782,700 + Xcc-8004.1847.1 0.24 -1.5 1,782,701 - Xcc-8004.1847.1 0.24 -0.0 1,782,701 - Xcc-8004.1847.1 0.24 -3.3 1,782,701 - Xcc-8004.1847.1 0.24 +2.6 1,782,840 + Xcc-8004.1847.1 0.38 -1.0 1,783,025 + Xcc-8004.1847.1 0.57 -0.1 1,783,025 + Xcc-8004.1847.1 0.57 +1.1 1,783,026 - Xcc-8004.1847.1 0.57 -2.1 1,783,087 + Xcc-8004.1847.1 0.63 -0.2 1,783,088 - Xcc-8004.1847.1 0.63 -2.2 1,783,111 + Xcc-8004.1847.1 0.65 +0.7 1,783,112 - Xcc-8004.1847.1 0.65 -0.4 1,783,112 - Xcc-8004.1847.1 0.65 -1.1 1,783,112 - Xcc-8004.1847.1 0.65 +1.1 1,783,114 + Xcc-8004.1847.1 0.65 -0.5 1,783,114 + Xcc-8004.1847.1 0.65 +0.6 1,783,114 + Xcc-8004.1847.1 0.65 +0.6 1,783,115 - Xcc-8004.1847.1 0.66 -1.9 1,783,115 - Xcc-8004.1847.1 0.66 +1.4 1,783,115 - Xcc-8004.1847.1 0.66 -2.5 1,783,156 + Xcc-8004.1847.1 0.70 +0.4 1,783,157 - Xcc-8004.1847.1 0.70 -1.0 1,783,192 + Xcc-8004.1847.1 0.73 -0.8 1,783,219 + Xcc-8004.1847.1 0.76 -0.8 1,783,220 - Xcc-8004.1847.1 0.76 -0.4 1,783,220 - Xcc-8004.1847.1 0.76 -1.1 1,783,220 - Xcc-8004.1847.1 0.76 -0.2 1,783,220 - Xcc-8004.1847.1 0.76 -1.6 1,783,364 + -0.2 1,783,365 - -1.1 1,783,913 + Xcc-8004.1848.1 0.86 -0.8 1,783,913 + Xcc-8004.1848.1 0.86 +0.5 1,783,913 + Xcc-8004.1848.1 0.86 -1.0 1,783,914 - Xcc-8004.1848.1 0.86 -1.1 1,784,213 + Xcc-8004.1849.1 0.17 -0.2 1,784,213 + Xcc-8004.1849.1 0.17 -0.5 1,784,390 + Xcc-8004.1849.1 0.30 +2.1 1,784,390 + Xcc-8004.1849.1 0.30 +0.7 1,784,391 - Xcc-8004.1849.1 0.30 +1.6 1,784,468 + Xcc-8004.1849.1 0.35 -0.1 1,784,487 - Xcc-8004.1849.1 0.37 +0.6 1,784,487 - Xcc-8004.1849.1 0.37 +1.6 1,784,487 - Xcc-8004.1849.1 0.37 -2.2 1,784,487 - Xcc-8004.1849.1 0.37 -1.2 1,784,487 - Xcc-8004.1849.1 0.37 +1.4 1,784,487 - Xcc-8004.1849.1 0.37 +0.1 1,784,574 - Xcc-8004.1849.1 0.43 -2.2 1,784,618 + Xcc-8004.1849.1 0.46 -0.3 1,784,618 + Xcc-8004.1849.1 0.46 -0.2 1,784,619 - Xcc-8004.1849.1 0.46 +1.3 1,784,619 - Xcc-8004.1849.1 0.46 -1.6 1,784,799 - Xcc-8004.1849.1 0.60 -0.5 1,784,799 - Xcc-8004.1849.1 0.60 -1.5 1,784,799 - Xcc-8004.1849.1 0.60 +0.5
Or see this region's nucleotide sequence