Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.166.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.163.1 and Xcc-8004.164.1 are separated by 186 nucleotidesXcc-8004.164.1 and Xcc-8004.165.1 are separated by 60 nucleotidesXcc-8004.165.1 and Xcc-8004.166.1 overlap by 4 nucleotidesXcc-8004.166.1 and Xcc-8004.168.1 are separated by 505 nucleotides Xcc-8004.163.1: Xcc-8004.163.1 - FIG01210576: hypothetical protein, at 155,229 to 159,110 Xcc-8004.163.1 Xcc-8004.164.1: Xcc-8004.164.1 - putative; ORF located using Glimmer/Genemark, at 159,297 to 159,506 Xcc-8004.164.1 Xcc-8004.165.1: Xcc-8004.165.1 - hypothetical protein, at 159,567 to 159,950 Xcc-8004.165.1 Xcc-8004.166.1: Xcc-8004.166.1 - FIG01209997: hypothetical protein, at 159,947 to 160,204 Xcc-8004.166.1 Xcc-8004.168.1: Xcc-8004.168.1 - hypothetical protein, at 160,710 to 161,405 Xcc-8004.168.1 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.962 kb on + strandat 158.962 kb on + strandat 158.962 kb on + strandat 158.962 kb on + strandat 158.963 kb on - strandat 158.963 kb on - strandat 159.057 kb on - strandat 159.152 kb on + strandat 159.152 kb on + strandat 159.152 kb on + strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.253 kb on + strandat 159.253 kb on + strandat 159.254 kb on - strandat 159.378 kb on - strand, within Xcc-8004.164.1at 159.421 kb on - strand, within Xcc-8004.164.1at 159.421 kb on - strand, within Xcc-8004.164.1at 159.459 kb on + strand, within Xcc-8004.164.1at 159.459 kb on + strand, within Xcc-8004.164.1at 159.460 kb on - strand, within Xcc-8004.164.1at 159.460 kb on - strand, within Xcc-8004.164.1at 159.473 kb on + strand, within Xcc-8004.164.1at 159.473 kb on + strand, within Xcc-8004.164.1at 159.474 kb on - strand, within Xcc-8004.164.1at 159.474 kb on - strand, within Xcc-8004.164.1at 159.505 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.554 kb on + strandat 159.555 kb on - strandat 159.586 kb on + strandat 159.654 kb on - strand, within Xcc-8004.165.1at 159.668 kb on - strand, within Xcc-8004.165.1at 159.935 kb on + strandat 159.936 kb on - strandat 159.981 kb on + strand, within Xcc-8004.166.1at 159.981 kb on + strand, within Xcc-8004.166.1at 159.981 kb on + strand, within Xcc-8004.166.1at 160.009 kb on + strand, within Xcc-8004.166.1at 160.043 kb on - strand, within Xcc-8004.166.1at 160.050 kb on - strand, within Xcc-8004.166.1at 160.100 kb on + strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.167 kb on - strand, within Xcc-8004.166.1at 160.167 kb on - strand, within Xcc-8004.166.1at 160.169 kb on + strand, within Xcc-8004.166.1at 160.170 kb on - strand, within Xcc-8004.166.1at 160.255 kb on + strandat 160.280 kb on + strandat 160.306 kb on - strandat 160.306 kb on - strandat 160.481 kb on + strandat 160.487 kb on + strandat 160.527 kb on + strandat 160.527 kb on + strandat 160.527 kb on + strandat 160.528 kb on - strandat 160.528 kb on - strandat 160.558 kb on + strandat 160.590 kb on - strandat 160.596 kb on - strandat 160.637 kb on - strandat 160.648 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.827 kb on + strand, within Xcc-8004.168.1at 160.828 kb on - strand, within Xcc-8004.168.1at 160.842 kb on - strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.920 kb on - strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.927 kb on - strand, within Xcc-8004.168.1at 161.011 kb on + strand, within Xcc-8004.168.1at 161.012 kb on - strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.147 kb on + strand, within Xcc-8004.168.1at 161.148 kb on - strand, within Xcc-8004.168.1at 161.155 kb on + strand, within Xcc-8004.168.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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158,962 + -0.2
158,962 + -0.3
158,962 + -0.3
158,962 + +0.1
158,963 - +1.0
158,963 - +1.0
159,057 - -0.3
159,152 + +1.3
159,152 + -2.3
159,152 + +0.9
159,153 - +0.3
159,153 - +1.0
159,153 - +0.2
159,153 - +1.4
159,153 - +1.8
159,153 - +0.2
159,253 + -0.5
159,253 + +1.4
159,254 - +0.0
159,378 - Xcc-8004.164.1 0.39 -2.8
159,421 - Xcc-8004.164.1 0.59 +2.3
159,421 - Xcc-8004.164.1 0.59 +0.4
159,459 + Xcc-8004.164.1 0.77 +0.2
159,459 + Xcc-8004.164.1 0.77 -1.0
159,460 - Xcc-8004.164.1 0.78 +1.5
159,460 - Xcc-8004.164.1 0.78 +0.8
159,473 + Xcc-8004.164.1 0.84 -2.3
159,473 + Xcc-8004.164.1 0.84 +2.2
159,474 - Xcc-8004.164.1 0.84 -0.7
159,474 - Xcc-8004.164.1 0.84 +1.6
159,505 - -0.9
159,543 - +0.2
159,543 - -1.6
159,554 + +0.4
159,555 - +0.4
159,586 + +0.4
159,654 - Xcc-8004.165.1 0.23 -0.1
159,668 - Xcc-8004.165.1 0.26 -1.7
159,935 + +0.6
159,936 - +0.4
159,981 + Xcc-8004.166.1 0.13 -1.0
159,981 + Xcc-8004.166.1 0.13 -2.5
159,981 + Xcc-8004.166.1 0.13 -0.4
160,009 + Xcc-8004.166.1 0.24 -2.0
160,043 - Xcc-8004.166.1 0.37 +0.0
160,050 - Xcc-8004.166.1 0.40 -1.2
160,100 + Xcc-8004.166.1 0.59 -1.6
160,101 - Xcc-8004.166.1 0.60 -1.0
160,101 - Xcc-8004.166.1 0.60 -1.4
160,101 - Xcc-8004.166.1 0.60 -0.0
160,167 - Xcc-8004.166.1 0.85 -2.1
160,167 - Xcc-8004.166.1 0.85 +0.1
160,169 + Xcc-8004.166.1 0.86 +0.1
160,170 - Xcc-8004.166.1 0.86 +0.6
160,255 + -0.3
160,280 + -0.7
160,306 - -0.3
160,306 - -1.2
160,481 + +0.2
160,487 + -3.2
160,527 + +0.4
160,527 + +1.8
160,527 + -0.6
160,528 - +1.1
160,528 - +1.0
160,558 + -0.5
160,590 - +1.2
160,596 - -0.2
160,637 - +0.9
160,648 + -1.5
160,685 + -0.1
160,685 + +0.4
160,686 - +0.9
160,686 - -0.4
160,824 + Xcc-8004.168.1 0.16 +0.7
160,824 + Xcc-8004.168.1 0.16 +0.6
160,824 + Xcc-8004.168.1 0.16 -0.2
160,825 - Xcc-8004.168.1 0.17 +0.3
160,825 - Xcc-8004.168.1 0.17 +1.8
160,827 + Xcc-8004.168.1 0.17 -0.5
160,828 - Xcc-8004.168.1 0.17 -0.8
160,842 - Xcc-8004.168.1 0.19 -3.1
160,847 + Xcc-8004.168.1 0.20 +3.3
160,847 + Xcc-8004.168.1 0.20 +1.1
160,851 + Xcc-8004.168.1 0.20 +2.2
160,851 + Xcc-8004.168.1 0.20 -0.2
160,851 + Xcc-8004.168.1 0.20 -1.5
160,851 + Xcc-8004.168.1 0.20 -0.2
160,852 - Xcc-8004.168.1 0.20 -1.2
160,852 - Xcc-8004.168.1 0.20 +3.5
160,853 + Xcc-8004.168.1 0.21 -0.5
160,853 + Xcc-8004.168.1 0.21 -1.2
160,853 + Xcc-8004.168.1 0.21 +1.4
160,854 - Xcc-8004.168.1 0.21 +2.5
160,854 - Xcc-8004.168.1 0.21 -1.3
160,854 - Xcc-8004.168.1 0.21 -0.6
160,854 - Xcc-8004.168.1 0.21 +0.7
160,854 - Xcc-8004.168.1 0.21 -0.2
160,854 - Xcc-8004.168.1 0.21 +1.8
160,919 + Xcc-8004.168.1 0.30 +0.2
160,919 + Xcc-8004.168.1 0.30 -0.8
160,920 - Xcc-8004.168.1 0.30 -1.2
160,926 + Xcc-8004.168.1 0.31 -2.1
160,926 + Xcc-8004.168.1 0.31 -0.5
160,927 - Xcc-8004.168.1 0.31 +0.4
161,011 + Xcc-8004.168.1 0.43 +0.8
161,012 - Xcc-8004.168.1 0.43 +1.1
161,129 + Xcc-8004.168.1 0.60 -1.5
161,129 + Xcc-8004.168.1 0.60 +1.8
161,129 + Xcc-8004.168.1 0.60 -1.1
161,129 + Xcc-8004.168.1 0.60 -0.3
161,130 - Xcc-8004.168.1 0.60 +0.2
161,130 - Xcc-8004.168.1 0.60 -1.9
161,147 + Xcc-8004.168.1 0.63 +0.5
161,148 - Xcc-8004.168.1 0.63 -1.9
161,155 + Xcc-8004.168.1 0.64 +0.5

Or see this region's nucleotide sequence