Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1522.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1520.1 and Xcc-8004.1521.1 are separated by 68 nucleotidesXcc-8004.1521.1 and Xcc-8004.1522.1 are separated by 176 nucleotidesXcc-8004.1522.1 and Xcc-8004.1523.1 overlap by 4 nucleotides Xcc-8004.1520.1: Xcc-8004.1520.1 - RebB protein, at 1,458,998 to 1,459,321 Xcc-8004.1520.1 Xcc-8004.1521.1: Xcc-8004.1521.1 - FIG01209895: hypothetical protein, at 1,459,390 to 1,459,851 Xcc-8004.1521.1 Xcc-8004.1522.1: Xcc-8004.1522.1 - Putative predicted metal-dependent hydrolase, at 1,460,028 to 1,460,774 Xcc-8004.1522.1 Xcc-8004.1523.1: Xcc-8004.1523.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 1,460,771 to 1,464,061 Xcc-8004.1523.1 Position (kb) 1460 1461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1459.100 kb on + strand, within Xcc-8004.1520.1at 1459.100 kb on + strand, within Xcc-8004.1520.1at 1459.101 kb on - strand, within Xcc-8004.1520.1at 1459.101 kb on - strand, within Xcc-8004.1520.1at 1459.160 kb on + strand, within Xcc-8004.1520.1at 1459.160 kb on + strand, within Xcc-8004.1520.1at 1459.161 kb on - strand, within Xcc-8004.1520.1at 1459.161 kb on - strand, within Xcc-8004.1520.1at 1459.205 kb on + strand, within Xcc-8004.1520.1at 1459.205 kb on + strand, within Xcc-8004.1520.1at 1459.205 kb on + strand, within Xcc-8004.1520.1at 1459.206 kb on - strand, within Xcc-8004.1520.1at 1459.319 kb on + strandat 1459.703 kb on + strand, within Xcc-8004.1521.1at 1459.765 kb on + strand, within Xcc-8004.1521.1at 1459.909 kb on - strandat 1459.937 kb on - strandat 1459.958 kb on - strandat 1460.021 kb on + strandat 1460.022 kb on - strandat 1460.057 kb on + strandat 1460.093 kb on + strandat 1460.093 kb on + strandat 1460.170 kb on + strand, within Xcc-8004.1522.1at 1460.171 kb on - strand, within Xcc-8004.1522.1at 1460.177 kb on + strand, within Xcc-8004.1522.1at 1460.335 kb on - strand, within Xcc-8004.1522.1at 1460.335 kb on - strand, within Xcc-8004.1522.1at 1460.419 kb on + strand, within Xcc-8004.1522.1at 1460.464 kb on - strand, within Xcc-8004.1522.1at 1460.470 kb on - strand, within Xcc-8004.1522.1at 1460.492 kb on - strand, within Xcc-8004.1522.1at 1460.515 kb on + strand, within Xcc-8004.1522.1at 1460.516 kb on - strand, within Xcc-8004.1522.1at 1460.516 kb on - strand, within Xcc-8004.1522.1at 1460.735 kb on - strandat 1461.039 kb on + strandat 1461.040 kb on - strandat 1461.080 kb on - strandat 1461.133 kb on - strand, within Xcc-8004.1523.1at 1461.213 kb on + strand, within Xcc-8004.1523.1at 1461.213 kb on + strand, within Xcc-8004.1523.1at 1461.343 kb on - strand, within Xcc-8004.1523.1at 1461.414 kb on + strand, within Xcc-8004.1523.1at 1461.415 kb on - strand, within Xcc-8004.1523.1at 1461.415 kb on - strand, within Xcc-8004.1523.1at 1461.415 kb on - strand, within Xcc-8004.1523.1at 1461.423 kb on + strand, within Xcc-8004.1523.1at 1461.423 kb on + strand, within Xcc-8004.1523.1at 1461.495 kb on + strand, within Xcc-8004.1523.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,459,100 + Xcc-8004.1520.1 0.31 -1.6
1,459,100 + Xcc-8004.1520.1 0.31 -0.2
1,459,101 - Xcc-8004.1520.1 0.32 +1.1
1,459,101 - Xcc-8004.1520.1 0.32 -1.0
1,459,160 + Xcc-8004.1520.1 0.50 -1.2
1,459,160 + Xcc-8004.1520.1 0.50 -1.4
1,459,161 - Xcc-8004.1520.1 0.50 -0.7
1,459,161 - Xcc-8004.1520.1 0.50 -1.2
1,459,205 + Xcc-8004.1520.1 0.64 +0.1
1,459,205 + Xcc-8004.1520.1 0.64 -0.3
1,459,205 + Xcc-8004.1520.1 0.64 -1.8
1,459,206 - Xcc-8004.1520.1 0.64 +0.1
1,459,319 + +1.0
1,459,703 + Xcc-8004.1521.1 0.68 -1.6
1,459,765 + Xcc-8004.1521.1 0.81 -1.1
1,459,909 - -3.2
1,459,937 - +0.4
1,459,958 - -0.6
1,460,021 + +0.3
1,460,022 - +1.1
1,460,057 + -0.6
1,460,093 + -0.4
1,460,093 + +1.3
1,460,170 + Xcc-8004.1522.1 0.19 +1.4
1,460,171 - Xcc-8004.1522.1 0.19 +1.7
1,460,177 + Xcc-8004.1522.1 0.20 -0.9
1,460,335 - Xcc-8004.1522.1 0.41 +1.2
1,460,335 - Xcc-8004.1522.1 0.41 -0.3
1,460,419 + Xcc-8004.1522.1 0.52 -1.7
1,460,464 - Xcc-8004.1522.1 0.58 -2.1
1,460,470 - Xcc-8004.1522.1 0.59 +0.4
1,460,492 - Xcc-8004.1522.1 0.62 +1.0
1,460,515 + Xcc-8004.1522.1 0.65 -2.5
1,460,516 - Xcc-8004.1522.1 0.65 +0.3
1,460,516 - Xcc-8004.1522.1 0.65 +0.1
1,460,735 - +1.6
1,461,039 + -0.9
1,461,040 - +0.7
1,461,080 - -0.7
1,461,133 - Xcc-8004.1523.1 0.11 +0.9
1,461,213 + Xcc-8004.1523.1 0.13 +0.9
1,461,213 + Xcc-8004.1523.1 0.13 +3.2
1,461,343 - Xcc-8004.1523.1 0.17 +1.7
1,461,414 + Xcc-8004.1523.1 0.20 +3.2
1,461,415 - Xcc-8004.1523.1 0.20 +1.9
1,461,415 - Xcc-8004.1523.1 0.20 +0.5
1,461,415 - Xcc-8004.1523.1 0.20 +1.5
1,461,423 + Xcc-8004.1523.1 0.20 +1.7
1,461,423 + Xcc-8004.1523.1 0.20 -0.2
1,461,495 + Xcc-8004.1523.1 0.22 +1.2

Or see this region's nucleotide sequence