Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1107.1 and Xcc-8004.1108.1 overlap by 4 nucleotides Xcc-8004.1108.1 and Xcc-8004.1109.1 are separated by 141 nucleotides Xcc-8004.1109.1 and Xcc-8004.1110.1 are separated by 384 nucleotides
Xcc-8004.1107.1: Xcc-8004.1107.1 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-), at 1,052,751 to 1,054,163
Xcc-8004.1107.1
Xcc-8004.1108.1: Xcc-8004.1108.1 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 1,054,160 to 1,054,759
Xcc-8004.1108.1
Xcc-8004.1109.1: Xcc-8004.1109.1 - FIG01211035: hypothetical protein, at 1,054,901 to 1,055,785
Xcc-8004.1109.1
Xcc-8004.1110.1: Xcc-8004.1110.1 - DedA protein, at 1,056,170 to 1,058,200
Xcc-8004.1110.1
Position (kb) 1054
1055
1056 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1054.052 kb on + strand at 1054.052 kb on + strand at 1054.052 kb on + strand at 1054.052 kb on + strand at 1054.052 kb on + strand at 1054.053 kb on - strand at 1054.053 kb on - strand at 1054.053 kb on - strand at 1054.373 kb on + strand, within Xcc-8004.1108.1 at 1054.374 kb on - strand, within Xcc-8004.1108.1 at 1054.915 kb on - strand at 1055.000 kb on + strand, within Xcc-8004.1109.1 at 1055.000 kb on + strand, within Xcc-8004.1109.1 at 1055.001 kb on - strand, within Xcc-8004.1109.1 at 1055.001 kb on - strand, within Xcc-8004.1109.1 at 1055.003 kb on + strand, within Xcc-8004.1109.1 at 1055.094 kb on - strand, within Xcc-8004.1109.1 at 1055.094 kb on - strand, within Xcc-8004.1109.1 at 1055.094 kb on - strand, within Xcc-8004.1109.1 at 1055.234 kb on + strand, within Xcc-8004.1109.1 at 1055.234 kb on + strand, within Xcc-8004.1109.1 at 1055.234 kb on + strand, within Xcc-8004.1109.1 at 1055.235 kb on - strand, within Xcc-8004.1109.1 at 1055.235 kb on - strand, within Xcc-8004.1109.1 at 1055.235 kb on - strand, within Xcc-8004.1109.1 at 1055.235 kb on - strand, within Xcc-8004.1109.1 at 1055.235 kb on - strand, within Xcc-8004.1109.1 at 1055.499 kb on - strand, within Xcc-8004.1109.1 at 1055.579 kb on + strand, within Xcc-8004.1109.1 at 1055.579 kb on + strand, within Xcc-8004.1109.1 at 1055.579 kb on + strand, within Xcc-8004.1109.1 at 1055.580 kb on - strand, within Xcc-8004.1109.1 at 1055.580 kb on - strand, within Xcc-8004.1109.1 at 1055.580 kb on - strand, within Xcc-8004.1109.1 at 1055.580 kb on - strand, within Xcc-8004.1109.1 at 1055.695 kb on + strand, within Xcc-8004.1109.1 at 1055.695 kb on + strand, within Xcc-8004.1109.1 at 1055.695 kb on + strand, within Xcc-8004.1109.1 at 1055.695 kb on + strand, within Xcc-8004.1109.1 at 1055.696 kb on - strand, within Xcc-8004.1109.1 at 1055.696 kb on - strand, within Xcc-8004.1109.1 at 1055.696 kb on - strand, within Xcc-8004.1109.1 at 1055.696 kb on - strand, within Xcc-8004.1109.1 at 1055.813 kb on + strand at 1055.907 kb on + strand at 1055.907 kb on + strand at 1055.908 kb on - strand at 1055.908 kb on - strand at 1055.908 kb on - strand at 1055.908 kb on - strand at 1055.940 kb on - strand at 1056.009 kb on + strand at 1056.010 kb on - strand at 1056.061 kb on - strand at 1056.420 kb on + strand, within Xcc-8004.1110.1 at 1056.746 kb on - strand, within Xcc-8004.1110.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 1,054,052 + -0.5 1,054,052 + -1.1 1,054,052 + -0.1 1,054,052 + -0.3 1,054,052 + -0.9 1,054,053 - +0.7 1,054,053 - -0.8 1,054,053 - -1.3 1,054,373 + Xcc-8004.1108.1 0.35 -0.3 1,054,374 - Xcc-8004.1108.1 0.36 -0.5 1,054,915 - -1.3 1,055,000 + Xcc-8004.1109.1 0.11 +0.7 1,055,000 + Xcc-8004.1109.1 0.11 +0.6 1,055,001 - Xcc-8004.1109.1 0.11 -0.4 1,055,001 - Xcc-8004.1109.1 0.11 -0.3 1,055,003 + Xcc-8004.1109.1 0.12 +1.0 1,055,094 - Xcc-8004.1109.1 0.22 +1.1 1,055,094 - Xcc-8004.1109.1 0.22 +0.9 1,055,094 - Xcc-8004.1109.1 0.22 +0.4 1,055,234 + Xcc-8004.1109.1 0.38 -1.0 1,055,234 + Xcc-8004.1109.1 0.38 -0.0 1,055,234 + Xcc-8004.1109.1 0.38 -0.3 1,055,235 - Xcc-8004.1109.1 0.38 +0.4 1,055,235 - Xcc-8004.1109.1 0.38 -0.1 1,055,235 - Xcc-8004.1109.1 0.38 -0.8 1,055,235 - Xcc-8004.1109.1 0.38 -0.6 1,055,235 - Xcc-8004.1109.1 0.38 -1.3 1,055,499 - Xcc-8004.1109.1 0.68 +1.7 1,055,579 + Xcc-8004.1109.1 0.77 +0.1 1,055,579 + Xcc-8004.1109.1 0.77 +0.1 1,055,579 + Xcc-8004.1109.1 0.77 +1.0 1,055,580 - Xcc-8004.1109.1 0.77 +3.0 1,055,580 - Xcc-8004.1109.1 0.77 -1.9 1,055,580 - Xcc-8004.1109.1 0.77 -0.5 1,055,580 - Xcc-8004.1109.1 0.77 -0.6 1,055,695 + Xcc-8004.1109.1 0.90 -0.8 1,055,695 + Xcc-8004.1109.1 0.90 -2.6 1,055,695 + Xcc-8004.1109.1 0.90 +0.2 1,055,695 + Xcc-8004.1109.1 0.90 +0.6 1,055,696 - Xcc-8004.1109.1 0.90 -0.3 1,055,696 - Xcc-8004.1109.1 0.90 -0.7 1,055,696 - Xcc-8004.1109.1 0.90 -0.8 1,055,696 - Xcc-8004.1109.1 0.90 +0.2 1,055,813 + +0.0 1,055,907 + +0.7 1,055,907 + -0.6 1,055,908 - -0.1 1,055,908 - +0.1 1,055,908 - +0.3 1,055,908 - -2.0 1,055,940 - -1.0 1,056,009 + -1.9 1,056,010 - -0.2 1,056,061 - -1.1 1,056,420 + Xcc-8004.1110.1 0.12 +0.0 1,056,746 - Xcc-8004.1110.1 0.28 -3.4
Or see this region's nucleotide sequence