Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1012.1 and Xcc-8004.1013.1 are separated by 211 nucleotides Xcc-8004.1013.1 and Xcc-8004.1014.1 overlap by 1 nucleotides
Xcc-8004.1012.1: Xcc-8004.1012.1 - hypothetical protein, at 956,097 to 956,879
Xcc-8004.1012.1
Xcc-8004.1013.1: Xcc-8004.1013.1 - Probable GTPase related to EngC, at 957,091 to 958,182
Xcc-8004.1013.1
Xcc-8004.1014.1: Xcc-8004.1014.1 - FIG01210031: hypothetical protein, at 958,182 to 959,444
Xcc-8004.1014.1
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.096 kb on + strand at 956.096 kb on + strand at 956.097 kb on - strand at 956.187 kb on - strand, within Xcc-8004.1012.1 at 956.289 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.453 kb on - strand, within Xcc-8004.1012.1 at 956.472 kb on - strand, within Xcc-8004.1012.1 at 956.496 kb on + strand, within Xcc-8004.1012.1 at 956.497 kb on - strand, within Xcc-8004.1012.1 at 956.527 kb on - strand, within Xcc-8004.1012.1 at 956.567 kb on + strand, within Xcc-8004.1012.1 at 956.568 kb on - strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.611 kb on - strand, within Xcc-8004.1012.1 at 956.681 kb on + strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.891 kb on + strand at 956.891 kb on + strand at 956.892 kb on - strand at 956.895 kb on + strand at 956.895 kb on + strand at 956.896 kb on - strand at 956.896 kb on - strand at 956.988 kb on - strand at 957.079 kb on + strand at 958.440 kb on + strand, within Xcc-8004.1014.1 at 958.460 kb on + strand, within Xcc-8004.1014.1 at 958.461 kb on - strand, within Xcc-8004.1014.1 at 958.518 kb on + strand, within Xcc-8004.1014.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 956,096 + -2.0 956,096 + -1.0 956,097 - +0.7 956,187 - Xcc-8004.1012.1 0.11 +0.1 956,289 + Xcc-8004.1012.1 0.25 +0.8 956,452 + Xcc-8004.1012.1 0.45 +0.1 956,452 + Xcc-8004.1012.1 0.45 +0.2 956,453 - Xcc-8004.1012.1 0.45 +0.3 956,472 - Xcc-8004.1012.1 0.48 +1.0 956,496 + Xcc-8004.1012.1 0.51 +0.1 956,497 - Xcc-8004.1012.1 0.51 +1.2 956,527 - Xcc-8004.1012.1 0.55 -0.5 956,567 + Xcc-8004.1012.1 0.60 -0.9 956,568 - Xcc-8004.1012.1 0.60 +0.9 956,570 + Xcc-8004.1012.1 0.60 +2.7 956,570 + Xcc-8004.1012.1 0.60 +0.8 956,570 + Xcc-8004.1012.1 0.60 -0.7 956,611 - Xcc-8004.1012.1 0.66 +2.7 956,681 + Xcc-8004.1012.1 0.75 +0.7 956,682 - Xcc-8004.1012.1 0.75 -0.5 956,682 - Xcc-8004.1012.1 0.75 +0.3 956,682 - Xcc-8004.1012.1 0.75 -1.3 956,683 + Xcc-8004.1012.1 0.75 +0.7 956,683 + Xcc-8004.1012.1 0.75 +0.1 956,684 - Xcc-8004.1012.1 0.75 +1.4 956,684 - Xcc-8004.1012.1 0.75 -1.1 956,684 - Xcc-8004.1012.1 0.75 -1.2 956,684 - Xcc-8004.1012.1 0.75 +1.4 956,684 - Xcc-8004.1012.1 0.75 -0.5 956,891 + -0.6 956,891 + -0.2 956,892 - -0.3 956,895 + -0.3 956,895 + -0.1 956,896 - -0.6 956,896 - +0.3 956,988 - -0.4 957,079 + +0.8 958,440 + Xcc-8004.1014.1 0.20 -1.2 958,460 + Xcc-8004.1014.1 0.22 +0.1 958,461 - Xcc-8004.1014.1 0.22 +1.5 958,518 + Xcc-8004.1014.1 0.27 -0.5
Or see this region's nucleotide sequence