Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.887.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.885.1 and Xcc-8004.887.1 overlap by 4 nucleotidesXcc-8004.887.1 and Xcc-8004.889.1 are separated by 396 nucleotides Xcc-8004.885.1: Xcc-8004.885.1 - Penicillin-binding protein 2 (PBP-2), at 833,235 to 835,295 Xcc-8004.885.1 Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410 Xcc-8004.887.1 Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Position (kb) 835 836 837Strain fitness (log2 ratio) -1 0 1 2 3at 836.434 kb on + strandat 836.506 kb on + strandat 836.507 kb on - strandat 836.519 kb on - strandat 836.519 kb on - strandat 836.528 kb on - strandat 836.537 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.747 kb on + strandat 836.764 kb on + strandat 836.764 kb on + strandat 836.816 kb on - strandat 836.816 kb on - strandat 836.946 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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836,434 + +0.0
836,506 + +0.5
836,507 - +0.5
836,519 - -0.6
836,519 - +2.6
836,528 - -1.1
836,537 - -0.1
836,713 - +0.8
836,713 - +2.5
836,747 + -0.3
836,764 + +2.3
836,764 + -0.8
836,816 - +3.0
836,816 - +0.5
836,946 - Xcc-8004.889.1 0.19 -0.8
837,013 - Xcc-8004.889.1 0.29 -0.1
837,013 - Xcc-8004.889.1 0.29 +0.4
837,013 - Xcc-8004.889.1 0.29 -0.8

Or see this region's nucleotide sequence