Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4982.1 and Xcc-8004.4983.1 are separated by 232 nucleotides Xcc-8004.4983.1 and Xcc-8004.4984.1 are separated by 76 nucleotides Xcc-8004.4984.1 and Xcc-8004.4985.1 are separated by 110 nucleotides Xcc-8004.4985.1 and Xcc-8004.4986.1 are separated by 313 nucleotides Xcc-8004.4986.1 and Xcc-8004.4987.1 are separated by 82 nucleotides
Xcc-8004.4982.1: Xcc-8004.4982.1 - Protein yjbJ, at 4,730,494 to 4,730,703
Xcc-8004.4982.1
Xcc-8004.4983.1: Xcc-8004.4983.1 - hypothetical protein, at 4,730,936 to 4,731,070
Xcc-8004.4983.1
Xcc-8004.4984.1: Xcc-8004.4984.1 - hypothetical protein, at 4,731,147 to 4,731,299
Xcc-8004.4984.1
Xcc-8004.4985.1: Xcc-8004.4985.1 - Arginase (EC 3.5.3.1), at 4,731,410 to 4,732,333
Xcc-8004.4985.1
Xcc-8004.4986.1: Xcc-8004.4986.1 - FIG01209754: hypothetical protein, at 4,732,647 to 4,733,108
Xcc-8004.4986.1
Xcc-8004.4987.1: Xcc-8004.4987.1 - FIG01212434: hypothetical protein, at 4,733,191 to 4,733,550
Xcc-8004.4987.1
Position (kb) 4731
4732
4733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.565 kb on - strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.592 kb on - strand, within Xcc-8004.4982.1 at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4731.070 kb on + strand at 4731.070 kb on + strand at 4731.087 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.155 kb on + strand at 4731.156 kb on - strand at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.576 kb on + strand, within Xcc-8004.4985.1 at 4731.577 kb on - strand, within Xcc-8004.4985.1 at 4731.605 kb on + strand, within Xcc-8004.4985.1 at 4731.605 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.738 kb on + strand, within Xcc-8004.4985.1 at 4731.738 kb on + strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.920 kb on + strand, within Xcc-8004.4985.1 at 4731.920 kb on + strand, within Xcc-8004.4985.1 at 4731.921 kb on - strand, within Xcc-8004.4985.1 at 4731.931 kb on + strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.367 kb on + strand at 4732.368 kb on - strand at 4732.368 kb on - strand at 4732.368 kb on - strand at 4732.387 kb on + strand at 4732.387 kb on + strand at 4732.388 kb on - strand at 4732.388 kb on - strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.530 kb on + strand at 4732.530 kb on + strand at 4732.530 kb on + strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.574 kb on + strand at 4732.574 kb on + strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.609 kb on + strand at 4732.609 kb on + strand at 4732.609 kb on + strand at 4732.610 kb on - strand at 4732.716 kb on + strand, within Xcc-8004.4986.1 at 4732.716 kb on + strand, within Xcc-8004.4986.1 at 4732.926 kb on + strand, within Xcc-8004.4986.1 at 4732.926 kb on + strand, within Xcc-8004.4986.1 at 4732.927 kb on - strand, within Xcc-8004.4986.1 at 4732.927 kb on - strand, within Xcc-8004.4986.1 at 4733.180 kb on - strand at 4733.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,730,415 + -0.2 4,730,415 + -0.4 4,730,415 + -0.1 4,730,415 + -1.6 4,730,565 - Xcc-8004.4982.1 0.34 +2.9 4,730,591 + Xcc-8004.4982.1 0.46 -1.0 4,730,591 + Xcc-8004.4982.1 0.46 +1.5 4,730,592 - Xcc-8004.4982.1 0.47 -0.5 4,730,857 + +0.2 4,730,857 + -0.7 4,730,857 + -0.8 4,730,857 + -0.5 4,730,857 + -0.4 4,730,858 - -2.0 4,730,858 - +0.0 4,730,858 - +1.5 4,731,070 + -1.2 4,731,070 + +0.6 4,731,087 - -1.0 4,731,149 - +1.6 4,731,149 - -1.7 4,731,149 - +1.6 4,731,155 + -0.4 4,731,156 - -0.3 4,731,236 + Xcc-8004.4984.1 0.58 -0.1 4,731,236 + Xcc-8004.4984.1 0.58 -0.7 4,731,236 + Xcc-8004.4984.1 0.58 +0.0 4,731,236 + Xcc-8004.4984.1 0.58 -0.7 4,731,237 - Xcc-8004.4984.1 0.59 +1.0 4,731,237 - Xcc-8004.4984.1 0.59 -1.2 4,731,237 - Xcc-8004.4984.1 0.59 +3.4 4,731,237 - Xcc-8004.4984.1 0.59 -1.5 4,731,237 - Xcc-8004.4984.1 0.59 +0.4 4,731,491 + +0.3 4,731,491 + -1.7 4,731,491 + +0.0 4,731,491 + -2.5 4,731,492 - +0.7 4,731,492 - -0.5 4,731,492 - -0.4 4,731,492 - +0.0 4,731,492 - +0.8 4,731,492 - -0.3 4,731,492 - -0.5 4,731,576 + Xcc-8004.4985.1 0.18 -0.2 4,731,577 - Xcc-8004.4985.1 0.18 +0.2 4,731,605 + Xcc-8004.4985.1 0.21 -1.1 4,731,605 + Xcc-8004.4985.1 0.21 +1.0 4,731,726 + Xcc-8004.4985.1 0.34 +1.2 4,731,726 + Xcc-8004.4985.1 0.34 +0.0 4,731,726 + Xcc-8004.4985.1 0.34 -0.5 4,731,727 - Xcc-8004.4985.1 0.34 -0.2 4,731,727 - Xcc-8004.4985.1 0.34 +3.0 4,731,727 - Xcc-8004.4985.1 0.34 +1.1 4,731,727 - Xcc-8004.4985.1 0.34 -0.4 4,731,727 - Xcc-8004.4985.1 0.34 -0.1 4,731,727 - Xcc-8004.4985.1 0.34 +1.2 4,731,738 + Xcc-8004.4985.1 0.35 +0.4 4,731,738 + Xcc-8004.4985.1 0.35 +0.2 4,731,739 - Xcc-8004.4985.1 0.36 +0.8 4,731,739 - Xcc-8004.4985.1 0.36 +1.7 4,731,739 - Xcc-8004.4985.1 0.36 -0.1 4,731,920 + Xcc-8004.4985.1 0.55 -0.1 4,731,920 + Xcc-8004.4985.1 0.55 -0.5 4,731,921 - Xcc-8004.4985.1 0.55 +0.5 4,731,931 + Xcc-8004.4985.1 0.56 -1.0 4,731,932 - Xcc-8004.4985.1 0.56 +1.4 4,731,932 - Xcc-8004.4985.1 0.56 -1.4 4,731,932 - Xcc-8004.4985.1 0.56 +2.4 4,731,932 - Xcc-8004.4985.1 0.56 +0.6 4,731,994 - Xcc-8004.4985.1 0.63 -0.4 4,731,994 - Xcc-8004.4985.1 0.63 -0.5 4,731,994 - Xcc-8004.4985.1 0.63 -1.4 4,731,994 - Xcc-8004.4985.1 0.63 +1.6 4,732,080 + Xcc-8004.4985.1 0.73 -1.8 4,732,080 + Xcc-8004.4985.1 0.73 -1.3 4,732,080 + Xcc-8004.4985.1 0.73 -0.2 4,732,080 + Xcc-8004.4985.1 0.73 -1.2 4,732,080 + Xcc-8004.4985.1 0.73 -1.4 4,732,080 + Xcc-8004.4985.1 0.73 -0.6 4,732,081 - Xcc-8004.4985.1 0.73 -0.3 4,732,081 - Xcc-8004.4985.1 0.73 +0.0 4,732,081 - Xcc-8004.4985.1 0.73 +0.2 4,732,081 - Xcc-8004.4985.1 0.73 +0.1 4,732,081 - Xcc-8004.4985.1 0.73 +0.7 4,732,081 - Xcc-8004.4985.1 0.73 +0.5 4,732,081 - Xcc-8004.4985.1 0.73 +0.1 4,732,320 + -0.3 4,732,320 + -0.8 4,732,320 + +0.4 4,732,320 + +0.3 4,732,320 + -0.2 4,732,320 + -0.5 4,732,320 + +0.1 4,732,321 - +0.4 4,732,321 - +0.9 4,732,321 - -1.8 4,732,321 - +0.1 4,732,321 - -0.1 4,732,321 - -0.5 4,732,367 + -0.3 4,732,368 - +0.6 4,732,368 - -0.1 4,732,368 - -1.4 4,732,387 + +0.1 4,732,387 + +0.1 4,732,388 - -0.0 4,732,388 - -1.2 4,732,462 + +0.3 4,732,462 + +0.4 4,732,462 + -0.7 4,732,462 + +0.5 4,732,462 + +0.8 4,732,462 + -0.5 4,732,462 + +0.2 4,732,462 + -0.2 4,732,462 + -0.4 4,732,463 - +0.0 4,732,463 - -0.5 4,732,463 - -0.4 4,732,463 - -0.9 4,732,463 - +0.1 4,732,463 - -0.4 4,732,463 - +0.1 4,732,463 - +0.4 4,732,463 - -0.1 4,732,463 - +0.1 4,732,463 - -1.6 4,732,463 - +1.6 4,732,530 + +0.3 4,732,530 + -1.5 4,732,530 + -3.0 4,732,531 - -0.7 4,732,531 - -1.2 4,732,531 - +1.0 4,732,531 - +1.5 4,732,531 - +1.1 4,732,531 - -0.1 4,732,563 + -0.5 4,732,563 + +2.1 4,732,563 + +0.3 4,732,563 + -1.3 4,732,563 + +0.0 4,732,563 + -2.6 4,732,563 + -1.8 4,732,564 - +1.9 4,732,564 - +1.4 4,732,564 - -1.4 4,732,564 - +0.7 4,732,564 - +0.9 4,732,564 - -0.5 4,732,574 + -1.2 4,732,574 + +0.5 4,732,575 - -0.6 4,732,575 - +1.0 4,732,575 - +1.9 4,732,575 - -0.5 4,732,609 + +0.5 4,732,609 + -2.1 4,732,609 + -0.4 4,732,610 - -2.6 4,732,716 + Xcc-8004.4986.1 0.15 +0.3 4,732,716 + Xcc-8004.4986.1 0.15 +3.5 4,732,926 + Xcc-8004.4986.1 0.60 -1.3 4,732,926 + Xcc-8004.4986.1 0.60 -2.6 4,732,927 - Xcc-8004.4986.1 0.61 +0.0 4,732,927 - Xcc-8004.4986.1 0.61 -0.4 4,733,180 - -0.9 4,733,180 - +2.6
Or see this region's nucleotide sequence