Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4952.1 and Xcc-8004.4953.1 are separated by 114 nucleotides Xcc-8004.4953.1 and Xcc-8004.4954.1 are separated by 60 nucleotides
Xcc-8004.4952.1: Xcc-8004.4952.1 - transport protein, at 4,704,648 to 4,705,754
Xcc-8004.4952.1
Xcc-8004.4953.1: Xcc-8004.4953.1 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 4,705,869 to 4,706,600
Xcc-8004.4953.1
Xcc-8004.4954.1: Xcc-8004.4954.1 - Peptidase B (EC 3.4.11.23), at 4,706,661 to 4,708,031
Xcc-8004.4954.1
Position (kb) 4705
4706
4707 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.311 kb on + strand, within Xcc-8004.4952.1 at 4705.311 kb on + strand, within Xcc-8004.4952.1 at 4705.312 kb on - strand, within Xcc-8004.4952.1 at 4705.312 kb on - strand, within Xcc-8004.4952.1 at 4705.337 kb on + strand, within Xcc-8004.4952.1 at 4705.337 kb on + strand, within Xcc-8004.4952.1 at 4705.338 kb on - strand, within Xcc-8004.4952.1 at 4705.338 kb on - strand, within Xcc-8004.4952.1 at 4705.355 kb on - strand, within Xcc-8004.4952.1 at 4705.375 kb on + strand, within Xcc-8004.4952.1 at 4705.376 kb on - strand, within Xcc-8004.4952.1 at 4705.376 kb on - strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.444 kb on - strand, within Xcc-8004.4952.1 at 4705.536 kb on + strand, within Xcc-8004.4952.1 at 4705.536 kb on + strand, within Xcc-8004.4952.1 at 4705.537 kb on - strand, within Xcc-8004.4952.1 at 4705.540 kb on + strand, within Xcc-8004.4952.1 at 4705.540 kb on + strand, within Xcc-8004.4952.1 at 4705.541 kb on - strand, within Xcc-8004.4952.1 at 4705.541 kb on - strand, within Xcc-8004.4952.1 at 4705.857 kb on + strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.858 kb on - strand at 4705.959 kb on + strand, within Xcc-8004.4953.1 at 4705.959 kb on + strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4705.960 kb on - strand, within Xcc-8004.4953.1 at 4706.148 kb on + strand, within Xcc-8004.4953.1 at 4706.148 kb on + strand, within Xcc-8004.4953.1 at 4706.149 kb on - strand, within Xcc-8004.4953.1 at 4706.149 kb on - strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.160 kb on + strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.161 kb on - strand, within Xcc-8004.4953.1 at 4706.188 kb on - strand, within Xcc-8004.4953.1 at 4706.884 kb on - strand, within Xcc-8004.4954.1 at 4706.884 kb on - strand, within Xcc-8004.4954.1 at 4706.889 kb on + strand, within Xcc-8004.4954.1 at 4706.890 kb on - strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.113 kb on + strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1 at 4707.114 kb on - strand, within Xcc-8004.4954.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,705,206 + Xcc-8004.4952.1 0.50 -0.4 4,705,206 + Xcc-8004.4952.1 0.50 +2.1 4,705,206 + Xcc-8004.4952.1 0.50 -0.1 4,705,206 + Xcc-8004.4952.1 0.50 +1.3 4,705,206 + Xcc-8004.4952.1 0.50 +0.0 4,705,207 - Xcc-8004.4952.1 0.50 -0.0 4,705,207 - Xcc-8004.4952.1 0.50 -0.1 4,705,207 - Xcc-8004.4952.1 0.50 +0.1 4,705,207 - Xcc-8004.4952.1 0.50 +0.3 4,705,207 - Xcc-8004.4952.1 0.50 +1.5 4,705,207 - Xcc-8004.4952.1 0.50 +1.5 4,705,207 - Xcc-8004.4952.1 0.50 +1.4 4,705,311 + Xcc-8004.4952.1 0.60 -0.0 4,705,311 + Xcc-8004.4952.1 0.60 +4.2 4,705,312 - Xcc-8004.4952.1 0.60 -1.0 4,705,312 - Xcc-8004.4952.1 0.60 +1.5 4,705,337 + Xcc-8004.4952.1 0.62 +1.6 4,705,337 + Xcc-8004.4952.1 0.62 +2.6 4,705,338 - Xcc-8004.4952.1 0.62 +0.7 4,705,338 - Xcc-8004.4952.1 0.62 +0.3 4,705,355 - Xcc-8004.4952.1 0.64 -1.1 4,705,375 + Xcc-8004.4952.1 0.66 -0.8 4,705,376 - Xcc-8004.4952.1 0.66 +1.6 4,705,376 - Xcc-8004.4952.1 0.66 -0.9 4,705,443 + Xcc-8004.4952.1 0.72 -0.4 4,705,443 + Xcc-8004.4952.1 0.72 -1.0 4,705,443 + Xcc-8004.4952.1 0.72 +2.1 4,705,444 - Xcc-8004.4952.1 0.72 +2.0 4,705,536 + Xcc-8004.4952.1 0.80 -0.3 4,705,536 + Xcc-8004.4952.1 0.80 -0.1 4,705,537 - Xcc-8004.4952.1 0.80 -0.3 4,705,540 + Xcc-8004.4952.1 0.81 -2.6 4,705,540 + Xcc-8004.4952.1 0.81 -1.0 4,705,541 - Xcc-8004.4952.1 0.81 +0.3 4,705,541 - Xcc-8004.4952.1 0.81 +3.2 4,705,857 + -0.7 4,705,858 - -2.1 4,705,858 - -1.3 4,705,858 - +2.4 4,705,858 - +1.3 4,705,959 + Xcc-8004.4953.1 0.12 +0.6 4,705,959 + Xcc-8004.4953.1 0.12 +0.4 4,705,960 - Xcc-8004.4953.1 0.12 -0.9 4,705,960 - Xcc-8004.4953.1 0.12 +0.6 4,705,960 - Xcc-8004.4953.1 0.12 -0.2 4,705,960 - Xcc-8004.4953.1 0.12 -0.1 4,706,148 + Xcc-8004.4953.1 0.38 -1.4 4,706,148 + Xcc-8004.4953.1 0.38 +0.0 4,706,149 - Xcc-8004.4953.1 0.38 -0.5 4,706,149 - Xcc-8004.4953.1 0.38 +0.4 4,706,160 + Xcc-8004.4953.1 0.40 -2.5 4,706,160 + Xcc-8004.4953.1 0.40 -1.0 4,706,160 + Xcc-8004.4953.1 0.40 -0.7 4,706,160 + Xcc-8004.4953.1 0.40 -0.3 4,706,161 - Xcc-8004.4953.1 0.40 -1.0 4,706,161 - Xcc-8004.4953.1 0.40 +0.5 4,706,161 - Xcc-8004.4953.1 0.40 -1.4 4,706,161 - Xcc-8004.4953.1 0.40 -0.2 4,706,188 - Xcc-8004.4953.1 0.44 -1.5 4,706,884 - Xcc-8004.4954.1 0.16 +0.9 4,706,884 - Xcc-8004.4954.1 0.16 -1.0 4,706,889 + Xcc-8004.4954.1 0.17 -1.4 4,706,890 - Xcc-8004.4954.1 0.17 -0.1 4,707,113 + Xcc-8004.4954.1 0.33 -1.5 4,707,113 + Xcc-8004.4954.1 0.33 +0.2 4,707,113 + Xcc-8004.4954.1 0.33 -0.8 4,707,113 + Xcc-8004.4954.1 0.33 -0.2 4,707,113 + Xcc-8004.4954.1 0.33 -0.5 4,707,114 - Xcc-8004.4954.1 0.33 +2.1 4,707,114 - Xcc-8004.4954.1 0.33 -0.9 4,707,114 - Xcc-8004.4954.1 0.33 -1.2 4,707,114 - Xcc-8004.4954.1 0.33 -1.8 4,707,114 - Xcc-8004.4954.1 0.33 -0.4 4,707,114 - Xcc-8004.4954.1 0.33 -1.0
Or see this region's nucleotide sequence