Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4626.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4624.1 and Xcc-8004.4625.1 are separated by 81 nucleotidesXcc-8004.4625.1 and Xcc-8004.4626.1 are separated by 110 nucleotidesXcc-8004.4626.1 and Xcc-8004.4627.1 are separated by 10 nucleotides Xcc-8004.4624.1: Xcc-8004.4624.1 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 4,409,115 to 4,409,579 Xcc-8004.4624.1 Xcc-8004.4625.1: Xcc-8004.4625.1 - FIG01210439: hypothetical protein, at 4,409,661 to 4,410,110 Xcc-8004.4625.1 Xcc-8004.4626.1: Xcc-8004.4626.1 - Flagellar motor rotation protein MotA, at 4,410,221 to 4,411,075 Xcc-8004.4626.1 Xcc-8004.4627.1: Xcc-8004.4627.1 - Flagellar motor rotation protein MotB, at 4,411,086 to 4,412,267 Xcc-8004.4627.1 Position (kb) 4410 4411 4412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.265 kb on + strand, within Xcc-8004.4624.1at 4409.266 kb on - strand, within Xcc-8004.4624.1at 4409.266 kb on - strand, within Xcc-8004.4624.1at 4409.266 kb on - strand, within Xcc-8004.4624.1at 4409.353 kb on - strand, within Xcc-8004.4624.1at 4409.353 kb on - strand, within Xcc-8004.4624.1at 4409.910 kb on - strand, within Xcc-8004.4625.1at 4409.910 kb on - strand, within Xcc-8004.4625.1at 4409.959 kb on + strand, within Xcc-8004.4625.1at 4409.959 kb on + strand, within Xcc-8004.4625.1at 4409.959 kb on + strand, within Xcc-8004.4625.1at 4409.959 kb on + strand, within Xcc-8004.4625.1at 4409.960 kb on - strand, within Xcc-8004.4625.1at 4409.998 kb on - strand, within Xcc-8004.4625.1at 4410.050 kb on - strand, within Xcc-8004.4625.1at 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.200 kb on + strandat 4410.201 kb on - strandat 4410.201 kb on - strandat 4410.201 kb on - strandat 4410.201 kb on - strandat 4410.201 kb on - strandat 4410.201 kb on - strandat 4410.272 kb on + strandat 4410.272 kb on + strandat 4410.272 kb on + strandat 4410.272 kb on + strandat 4410.273 kb on - strandat 4410.273 kb on - strandat 4410.273 kb on - strandat 4410.273 kb on - strandat 4410.314 kb on + strand, within Xcc-8004.4626.1at 4410.314 kb on + strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.315 kb on - strand, within Xcc-8004.4626.1at 4410.428 kb on + strand, within Xcc-8004.4626.1at 4410.428 kb on + strand, within Xcc-8004.4626.1at 4410.428 kb on + strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.429 kb on - strand, within Xcc-8004.4626.1at 4410.443 kb on + strand, within Xcc-8004.4626.1at 4410.443 kb on + strand, within Xcc-8004.4626.1at 4410.443 kb on + strand, within Xcc-8004.4626.1at 4410.444 kb on - strand, within Xcc-8004.4626.1at 4410.444 kb on - strand, within Xcc-8004.4626.1at 4410.444 kb on - strand, within Xcc-8004.4626.1at 4410.467 kb on + strand, within Xcc-8004.4626.1at 4410.467 kb on + strand, within Xcc-8004.4626.1at 4410.468 kb on - strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.557 kb on + strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.558 kb on - strand, within Xcc-8004.4626.1at 4410.869 kb on + strand, within Xcc-8004.4626.1at 4410.869 kb on + strand, within Xcc-8004.4626.1at 4410.869 kb on + strand, within Xcc-8004.4626.1at 4410.869 kb on + strand, within Xcc-8004.4626.1at 4410.869 kb on + strand, within Xcc-8004.4626.1at 4410.870 kb on - strand, within Xcc-8004.4626.1at 4410.870 kb on - strand, within Xcc-8004.4626.1at 4410.870 kb on - strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.932 kb on + strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.933 kb on - strand, within Xcc-8004.4626.1at 4410.974 kb on + strand, within Xcc-8004.4626.1at 4410.974 kb on + strand, within Xcc-8004.4626.1at 4410.974 kb on + strand, within Xcc-8004.4626.1at 4410.975 kb on - strand, within Xcc-8004.4626.1at 4410.975 kb on - strand, within Xcc-8004.4626.1at 4410.975 kb on - strand, within Xcc-8004.4626.1at 4411.073 kb on + strandat 4411.073 kb on + strandat 4411.073 kb on + strandat 4411.073 kb on + strandat 4411.074 kb on - strandat 4411.074 kb on - strandat 4411.074 kb on - strandat 4411.074 kb on - strandat 4411.267 kb on - strand, within Xcc-8004.4627.1at 4411.635 kb on + strand, within Xcc-8004.4627.1at 4411.635 kb on + strand, within Xcc-8004.4627.1at 4411.636 kb on - strand, within Xcc-8004.4627.1at 4411.725 kb on + strand, within Xcc-8004.4627.1at 4411.725 kb on + strand, within Xcc-8004.4627.1at 4411.725 kb on + strand, within Xcc-8004.4627.1at 4411.726 kb on - strand, within Xcc-8004.4627.1at 4411.726 kb on - strand, within Xcc-8004.4627.1at 4411.743 kb on + strand, within Xcc-8004.4627.1at 4411.744 kb on - strand, within Xcc-8004.4627.1at 4411.744 kb on - strand, within Xcc-8004.4627.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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4,409,265 + Xcc-8004.4624.1 0.32 -1.0
4,409,265 + Xcc-8004.4624.1 0.32 +0.9
4,409,265 + Xcc-8004.4624.1 0.32 +0.0
4,409,265 + Xcc-8004.4624.1 0.32 -0.9
4,409,265 + Xcc-8004.4624.1 0.32 -0.2
4,409,265 + Xcc-8004.4624.1 0.32 +0.9
4,409,265 + Xcc-8004.4624.1 0.32 +1.2
4,409,265 + Xcc-8004.4624.1 0.32 -0.1
4,409,265 + Xcc-8004.4624.1 0.32 +0.8
4,409,265 + Xcc-8004.4624.1 0.32 -1.8
4,409,265 + Xcc-8004.4624.1 0.32 +1.5
4,409,265 + Xcc-8004.4624.1 0.32 +2.6
4,409,265 + Xcc-8004.4624.1 0.32 +3.2
4,409,266 - Xcc-8004.4624.1 0.32 +1.3
4,409,266 - Xcc-8004.4624.1 0.32 -0.2
4,409,266 - Xcc-8004.4624.1 0.32 -1.1
4,409,353 - Xcc-8004.4624.1 0.51 -0.5
4,409,353 - Xcc-8004.4624.1 0.51 -0.7
4,409,910 - Xcc-8004.4625.1 0.55 +0.1
4,409,910 - Xcc-8004.4625.1 0.55 -1.7
4,409,959 + Xcc-8004.4625.1 0.66 +2.9
4,409,959 + Xcc-8004.4625.1 0.66 +1.0
4,409,959 + Xcc-8004.4625.1 0.66 -1.4
4,409,959 + Xcc-8004.4625.1 0.66 +0.6
4,409,960 - Xcc-8004.4625.1 0.66 +2.4
4,409,998 - Xcc-8004.4625.1 0.75 -1.2
4,410,050 - Xcc-8004.4625.1 0.86 -0.5
4,410,200 + -0.5
4,410,200 + +0.6
4,410,200 + +0.0
4,410,200 + +1.4
4,410,200 + -1.2
4,410,200 + +1.5
4,410,200 + +0.8
4,410,200 + -0.5
4,410,200 + +1.0
4,410,201 - -0.1
4,410,201 - -2.4
4,410,201 - -0.4
4,410,201 - -1.6
4,410,201 - +1.9
4,410,201 - -2.4
4,410,272 + -0.6
4,410,272 + -0.2
4,410,272 + +1.4
4,410,272 + -0.4
4,410,273 - +0.2
4,410,273 - +1.3
4,410,273 - -1.3
4,410,273 - -0.4
4,410,314 + Xcc-8004.4626.1 0.11 -1.4
4,410,314 + Xcc-8004.4626.1 0.11 +0.4
4,410,315 - Xcc-8004.4626.1 0.11 -0.1
4,410,315 - Xcc-8004.4626.1 0.11 +0.3
4,410,315 - Xcc-8004.4626.1 0.11 -1.2
4,410,315 - Xcc-8004.4626.1 0.11 -0.3
4,410,315 - Xcc-8004.4626.1 0.11 -1.7
4,410,315 - Xcc-8004.4626.1 0.11 +0.2
4,410,315 - Xcc-8004.4626.1 0.11 -2.7
4,410,428 + Xcc-8004.4626.1 0.24 -0.4
4,410,428 + Xcc-8004.4626.1 0.24 -0.7
4,410,428 + Xcc-8004.4626.1 0.24 +0.3
4,410,429 - Xcc-8004.4626.1 0.24 -0.0
4,410,429 - Xcc-8004.4626.1 0.24 -0.7
4,410,429 - Xcc-8004.4626.1 0.24 +1.3
4,410,429 - Xcc-8004.4626.1 0.24 -0.7
4,410,429 - Xcc-8004.4626.1 0.24 -2.0
4,410,429 - Xcc-8004.4626.1 0.24 -0.2
4,410,443 + Xcc-8004.4626.1 0.26 -0.4
4,410,443 + Xcc-8004.4626.1 0.26 -2.1
4,410,443 + Xcc-8004.4626.1 0.26 -0.8
4,410,444 - Xcc-8004.4626.1 0.26 -0.6
4,410,444 - Xcc-8004.4626.1 0.26 -3.3
4,410,444 - Xcc-8004.4626.1 0.26 +0.8
4,410,467 + Xcc-8004.4626.1 0.29 -0.7
4,410,467 + Xcc-8004.4626.1 0.29 -0.6
4,410,468 - Xcc-8004.4626.1 0.29 -1.2
4,410,557 + Xcc-8004.4626.1 0.39 +1.0
4,410,557 + Xcc-8004.4626.1 0.39 -1.7
4,410,557 + Xcc-8004.4626.1 0.39 -0.2
4,410,557 + Xcc-8004.4626.1 0.39 -0.9
4,410,557 + Xcc-8004.4626.1 0.39 -0.4
4,410,557 + Xcc-8004.4626.1 0.39 +0.4
4,410,558 - Xcc-8004.4626.1 0.39 +0.5
4,410,558 - Xcc-8004.4626.1 0.39 -1.7
4,410,558 - Xcc-8004.4626.1 0.39 -1.3
4,410,558 - Xcc-8004.4626.1 0.39 -2.8
4,410,558 - Xcc-8004.4626.1 0.39 +0.7
4,410,558 - Xcc-8004.4626.1 0.39 +0.8
4,410,869 + Xcc-8004.4626.1 0.76 -0.3
4,410,869 + Xcc-8004.4626.1 0.76 -1.2
4,410,869 + Xcc-8004.4626.1 0.76 -1.9
4,410,869 + Xcc-8004.4626.1 0.76 -0.6
4,410,869 + Xcc-8004.4626.1 0.76 -0.7
4,410,870 - Xcc-8004.4626.1 0.76 -1.0
4,410,870 - Xcc-8004.4626.1 0.76 +0.2
4,410,870 - Xcc-8004.4626.1 0.76 +1.6
4,410,932 + Xcc-8004.4626.1 0.83 +0.6
4,410,932 + Xcc-8004.4626.1 0.83 -1.9
4,410,932 + Xcc-8004.4626.1 0.83 +2.1
4,410,932 + Xcc-8004.4626.1 0.83 -0.5
4,410,932 + Xcc-8004.4626.1 0.83 -0.5
4,410,932 + Xcc-8004.4626.1 0.83 -2.9
4,410,932 + Xcc-8004.4626.1 0.83 -1.9
4,410,932 + Xcc-8004.4626.1 0.83 -0.5
4,410,932 + Xcc-8004.4626.1 0.83 -0.9
4,410,933 - Xcc-8004.4626.1 0.83 +0.1
4,410,933 - Xcc-8004.4626.1 0.83 +0.5
4,410,933 - Xcc-8004.4626.1 0.83 +1.0
4,410,933 - Xcc-8004.4626.1 0.83 -0.9
4,410,933 - Xcc-8004.4626.1 0.83 -2.0
4,410,933 - Xcc-8004.4626.1 0.83 -0.0
4,410,933 - Xcc-8004.4626.1 0.83 -0.5
4,410,974 + Xcc-8004.4626.1 0.88 -0.3
4,410,974 + Xcc-8004.4626.1 0.88 -0.7
4,410,974 + Xcc-8004.4626.1 0.88 -0.5
4,410,975 - Xcc-8004.4626.1 0.88 +1.7
4,410,975 - Xcc-8004.4626.1 0.88 -1.7
4,410,975 - Xcc-8004.4626.1 0.88 +0.3
4,411,073 + +0.2
4,411,073 + +2.2
4,411,073 + -0.0
4,411,073 + +0.5
4,411,074 - +0.2
4,411,074 - -0.2
4,411,074 - +0.6
4,411,074 - +1.9
4,411,267 - Xcc-8004.4627.1 0.15 -0.3
4,411,635 + Xcc-8004.4627.1 0.46 -1.6
4,411,635 + Xcc-8004.4627.1 0.46 +1.2
4,411,636 - Xcc-8004.4627.1 0.47 -0.5
4,411,725 + Xcc-8004.4627.1 0.54 -1.2
4,411,725 + Xcc-8004.4627.1 0.54 +1.1
4,411,725 + Xcc-8004.4627.1 0.54 +0.2
4,411,726 - Xcc-8004.4627.1 0.54 +1.2
4,411,726 - Xcc-8004.4627.1 0.54 -1.9
4,411,743 + Xcc-8004.4627.1 0.56 +0.5
4,411,744 - Xcc-8004.4627.1 0.56 -0.1
4,411,744 - Xcc-8004.4627.1 0.56 -0.0

Or see this region's nucleotide sequence