Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4077.1 and Xcc-8004.4078.1 are separated by 39 nucleotides Xcc-8004.4078.1 and Xcc-8004.4079.1 are separated by 17 nucleotides Xcc-8004.4079.1 and Xcc-8004.4080.1 are separated by 171 nucleotides
Xcc-8004.4077.1: Xcc-8004.4077.1 - putative; ORF located using Glimmer/Genemark, at 3,934,518 to 3,935,066
Xcc-8004.4077.1
Xcc-8004.4078.1: Xcc-8004.4078.1 - putative; ORF located using Glimmer/Genemark, at 3,935,106 to 3,935,681
Xcc-8004.4078.1
Xcc-8004.4079.1: Xcc-8004.4079.1 - hypothetical protein, at 3,935,699 to 3,936,343
Xcc-8004.4079.1
Xcc-8004.4080.1: Xcc-8004.4080.1 - Phospholipase C, at 3,936,515 to 3,938,596
Xcc-8004.4080.1
Position (kb) 3935
3936
3937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3934.723 kb on + strand, within Xcc-8004.4077.1 at 3934.723 kb on + strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.724 kb on - strand, within Xcc-8004.4077.1 at 3934.847 kb on + strand, within Xcc-8004.4077.1 at 3934.848 kb on - strand, within Xcc-8004.4077.1 at 3934.848 kb on - strand, within Xcc-8004.4077.1 at 3935.085 kb on + strand at 3935.085 kb on + strand at 3935.107 kb on + strand at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.195 kb on - strand, within Xcc-8004.4078.1 at 3935.260 kb on + strand, within Xcc-8004.4078.1 at 3935.261 kb on - strand, within Xcc-8004.4078.1 at 3935.619 kb on - strand, within Xcc-8004.4078.1 at 3935.700 kb on + strand at 3935.700 kb on + strand at 3935.701 kb on - strand at 3935.702 kb on + strand at 3935.702 kb on + strand at 3935.702 kb on + strand at 3935.703 kb on - strand at 3936.002 kb on + strand, within Xcc-8004.4079.1 at 3936.002 kb on + strand, within Xcc-8004.4079.1 at 3936.003 kb on - strand, within Xcc-8004.4079.1 at 3936.621 kb on + strand at 3936.833 kb on + strand, within Xcc-8004.4080.1 at 3936.833 kb on + strand, within Xcc-8004.4080.1 at 3936.888 kb on + strand, within Xcc-8004.4080.1 at 3936.889 kb on - strand, within Xcc-8004.4080.1 at 3936.889 kb on - strand, within Xcc-8004.4080.1 at 3936.951 kb on + strand, within Xcc-8004.4080.1 at 3936.951 kb on + strand, within Xcc-8004.4080.1 at 3936.951 kb on + strand, within Xcc-8004.4080.1 at 3936.951 kb on + strand, within Xcc-8004.4080.1 at 3936.952 kb on - strand, within Xcc-8004.4080.1 at 3936.954 kb on + strand, within Xcc-8004.4080.1 at 3936.955 kb on - strand, within Xcc-8004.4080.1 at 3936.985 kb on - strand, within Xcc-8004.4080.1 at 3936.985 kb on - strand, within Xcc-8004.4080.1 at 3936.985 kb on - strand, within Xcc-8004.4080.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 3,934,723 + Xcc-8004.4077.1 0.37 +0.6 3,934,723 + Xcc-8004.4077.1 0.37 +0.0 3,934,724 - Xcc-8004.4077.1 0.38 +1.9 3,934,724 - Xcc-8004.4077.1 0.38 +0.5 3,934,724 - Xcc-8004.4077.1 0.38 -1.0 3,934,847 + Xcc-8004.4077.1 0.60 -1.0 3,934,848 - Xcc-8004.4077.1 0.60 +1.8 3,934,848 - Xcc-8004.4077.1 0.60 +0.3 3,935,085 + -0.2 3,935,085 + -0.6 3,935,107 + -0.4 3,935,195 - Xcc-8004.4078.1 0.15 +0.2 3,935,195 - Xcc-8004.4078.1 0.15 -0.8 3,935,195 - Xcc-8004.4078.1 0.15 -0.3 3,935,260 + Xcc-8004.4078.1 0.27 -0.4 3,935,261 - Xcc-8004.4078.1 0.27 -2.1 3,935,619 - Xcc-8004.4078.1 0.89 +0.1 3,935,700 + -2.3 3,935,700 + +1.1 3,935,701 - +1.0 3,935,702 + -0.8 3,935,702 + -1.1 3,935,702 + -1.2 3,935,703 - -0.3 3,936,002 + Xcc-8004.4079.1 0.47 +0.8 3,936,002 + Xcc-8004.4079.1 0.47 +0.6 3,936,003 - Xcc-8004.4079.1 0.47 +0.6 3,936,621 + -0.3 3,936,833 + Xcc-8004.4080.1 0.15 -1.0 3,936,833 + Xcc-8004.4080.1 0.15 -1.1 3,936,888 + Xcc-8004.4080.1 0.18 -0.8 3,936,889 - Xcc-8004.4080.1 0.18 +0.6 3,936,889 - Xcc-8004.4080.1 0.18 +0.8 3,936,951 + Xcc-8004.4080.1 0.21 -0.9 3,936,951 + Xcc-8004.4080.1 0.21 +0.6 3,936,951 + Xcc-8004.4080.1 0.21 -0.4 3,936,951 + Xcc-8004.4080.1 0.21 -0.2 3,936,952 - Xcc-8004.4080.1 0.21 +1.8 3,936,954 + Xcc-8004.4080.1 0.21 +1.3 3,936,955 - Xcc-8004.4080.1 0.21 +0.1 3,936,985 - Xcc-8004.4080.1 0.23 +1.0 3,936,985 - Xcc-8004.4080.1 0.23 +1.8 3,936,985 - Xcc-8004.4080.1 0.23 +0.4
Or see this region's nucleotide sequence