Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4072.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4070.1 and Xcc-8004.4071.1 are separated by 114 nucleotidesXcc-8004.4071.1 and Xcc-8004.4072.1 are separated by 235 nucleotidesXcc-8004.4072.1 and Xcc-8004.4073.1 are separated by 31 nucleotides Xcc-8004.4070.1: Xcc-8004.4070.1 - peptidyl-Asp metalloendopeptidase, at 3,926,855 to 3,928,108 Xcc-8004.4070.1 Xcc-8004.4071.1: Xcc-8004.4071.1 - hypothetical protein, at 3,928,223 to 3,928,480 Xcc-8004.4071.1 Xcc-8004.4072.1: Xcc-8004.4072.1 - COG2833: uncharacterized protein, at 3,928,716 to 3,929,564 Xcc-8004.4072.1 Xcc-8004.4073.1: Xcc-8004.4073.1 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 3,929,596 to 3,931,062 Xcc-8004.4073.1 Position (kb) 3928 3929 3930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3927.869 kb on + strand, within Xcc-8004.4070.1at 3927.869 kb on + strand, within Xcc-8004.4070.1at 3927.870 kb on - strand, within Xcc-8004.4070.1at 3927.954 kb on - strand, within Xcc-8004.4070.1at 3927.963 kb on - strand, within Xcc-8004.4070.1at 3927.963 kb on - strand, within Xcc-8004.4070.1at 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.122 kb on + strandat 3928.123 kb on - strandat 3928.178 kb on - strandat 3928.211 kb on + strandat 3928.212 kb on - strandat 3928.225 kb on - strandat 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.447 kb on + strand, within Xcc-8004.4071.1at 3928.448 kb on - strand, within Xcc-8004.4071.1at 3928.461 kb on - strandat 3928.514 kb on - strandat 3928.594 kb on + strandat 3928.594 kb on + strandat 3928.615 kb on + strandat 3928.616 kb on - strandat 3928.686 kb on + strandat 3928.687 kb on - strandat 3928.816 kb on + strand, within Xcc-8004.4072.1at 3929.110 kb on + strand, within Xcc-8004.4072.1at 3929.111 kb on - strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.195 kb on - strand, within Xcc-8004.4072.1at 3929.225 kb on - strand, within Xcc-8004.4072.1at 3929.307 kb on - strand, within Xcc-8004.4072.1at 3929.372 kb on + strand, within Xcc-8004.4072.1at 3929.372 kb on + strand, within Xcc-8004.4072.1at 3929.373 kb on - strand, within Xcc-8004.4072.1at 3929.654 kb on + strandat 3929.654 kb on + strandat 3929.655 kb on - strandat 3929.678 kb on + strandat 3929.678 kb on + strandat 3929.678 kb on + strandat 3929.679 kb on - strandat 3929.679 kb on - strandat 3929.765 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.863 kb on - strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.114 kb on - strand, within Xcc-8004.4073.1at 3930.163 kb on - strand, within Xcc-8004.4073.1at 3930.163 kb on - strand, within Xcc-8004.4073.1at 3930.299 kb on + strand, within Xcc-8004.4073.1at 3930.299 kb on + strand, within Xcc-8004.4073.1at 3930.300 kb on - strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.462 kb on - strand, within Xcc-8004.4073.1at 3930.462 kb on - strand, within Xcc-8004.4073.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
remove
3,927,869 + Xcc-8004.4070.1 0.81 +2.3
3,927,869 + Xcc-8004.4070.1 0.81 -0.9
3,927,870 - Xcc-8004.4070.1 0.81 -1.6
3,927,954 - Xcc-8004.4070.1 0.88 +0.5
3,927,963 - Xcc-8004.4070.1 0.88 -2.3
3,927,963 - Xcc-8004.4070.1 0.88 -0.0
3,928,122 + +0.8
3,928,122 + -1.3
3,928,122 + +1.6
3,928,122 + -0.6
3,928,123 - -1.5
3,928,178 - -1.3
3,928,211 + -1.6
3,928,212 - +0.6
3,928,225 - +1.0
3,928,447 + Xcc-8004.4071.1 0.87 +0.3
3,928,447 + Xcc-8004.4071.1 0.87 -0.4
3,928,447 + Xcc-8004.4071.1 0.87 -0.7
3,928,447 + Xcc-8004.4071.1 0.87 -0.7
3,928,447 + Xcc-8004.4071.1 0.87 +0.3
3,928,448 - Xcc-8004.4071.1 0.87 -2.1
3,928,461 - +0.4
3,928,514 - -0.4
3,928,594 + +1.3
3,928,594 + +0.3
3,928,615 + +1.2
3,928,616 - -0.8
3,928,686 + +0.6
3,928,687 - +0.6
3,928,816 + Xcc-8004.4072.1 0.12 -1.8
3,929,110 + Xcc-8004.4072.1 0.46 -2.4
3,929,111 - Xcc-8004.4072.1 0.47 -1.1
3,929,194 + Xcc-8004.4072.1 0.56 -0.3
3,929,194 + Xcc-8004.4072.1 0.56 +1.3
3,929,194 + Xcc-8004.4072.1 0.56 +0.4
3,929,194 + Xcc-8004.4072.1 0.56 -1.3
3,929,195 - Xcc-8004.4072.1 0.56 -1.2
3,929,225 - Xcc-8004.4072.1 0.60 +0.4
3,929,307 - Xcc-8004.4072.1 0.70 -0.1
3,929,372 + Xcc-8004.4072.1 0.77 -1.1
3,929,372 + Xcc-8004.4072.1 0.77 +0.6
3,929,373 - Xcc-8004.4072.1 0.77 -0.2
3,929,654 + -2.7
3,929,654 + -0.9
3,929,655 - -1.0
3,929,678 + -0.7
3,929,678 + -2.6
3,929,678 + +1.0
3,929,679 - -2.2
3,929,679 - -0.9
3,929,765 + Xcc-8004.4073.1 0.12 -0.2
3,929,858 + Xcc-8004.4073.1 0.18 -3.7
3,929,858 + Xcc-8004.4073.1 0.18 -1.4
3,929,858 + Xcc-8004.4073.1 0.18 -2.2
3,929,859 - Xcc-8004.4073.1 0.18 -3.2
3,929,859 - Xcc-8004.4073.1 0.18 -0.9
3,929,859 - Xcc-8004.4073.1 0.18 +0.4
3,929,859 - Xcc-8004.4073.1 0.18 -1.4
3,929,859 - Xcc-8004.4073.1 0.18 -1.0
3,929,863 - Xcc-8004.4073.1 0.18 -3.6
3,929,900 + Xcc-8004.4073.1 0.21 -2.6
3,929,900 + Xcc-8004.4073.1 0.21 -0.7
3,929,900 + Xcc-8004.4073.1 0.21 -0.2
3,929,900 + Xcc-8004.4073.1 0.21 -0.2
3,929,900 + Xcc-8004.4073.1 0.21 +0.3
3,929,901 - Xcc-8004.4073.1 0.21 -0.9
3,929,901 - Xcc-8004.4073.1 0.21 -0.4
3,929,901 - Xcc-8004.4073.1 0.21 +0.1
3,929,901 - Xcc-8004.4073.1 0.21 -0.2
3,929,901 - Xcc-8004.4073.1 0.21 +0.6
3,929,901 - Xcc-8004.4073.1 0.21 -1.2
3,930,113 + Xcc-8004.4073.1 0.35 -4.0
3,930,113 + Xcc-8004.4073.1 0.35 -1.9
3,930,113 + Xcc-8004.4073.1 0.35 -2.8
3,930,114 - Xcc-8004.4073.1 0.35 -2.9
3,930,163 - Xcc-8004.4073.1 0.39 -1.2
3,930,163 - Xcc-8004.4073.1 0.39 -2.9
3,930,299 + Xcc-8004.4073.1 0.48 -0.8
3,930,299 + Xcc-8004.4073.1 0.48 -1.1
3,930,300 - Xcc-8004.4073.1 0.48 -2.5
3,930,305 + Xcc-8004.4073.1 0.48 -2.2
3,930,305 + Xcc-8004.4073.1 0.48 -1.2
3,930,305 + Xcc-8004.4073.1 0.48 -1.9
3,930,305 + Xcc-8004.4073.1 0.48 -1.0
3,930,306 - Xcc-8004.4073.1 0.48 +0.6
3,930,306 - Xcc-8004.4073.1 0.48 -0.4
3,930,306 - Xcc-8004.4073.1 0.48 -1.7
3,930,461 + Xcc-8004.4073.1 0.59 +0.2
3,930,461 + Xcc-8004.4073.1 0.59 -2.9
3,930,461 + Xcc-8004.4073.1 0.59 -1.0
3,930,461 + Xcc-8004.4073.1 0.59 -2.4
3,930,462 - Xcc-8004.4073.1 0.59 -3.3
3,930,462 - Xcc-8004.4073.1 0.59 -0.2

Or see this region's nucleotide sequence