Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3604.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3603.1 and Xcc-8004.3604.1 overlap by 4 nucleotidesXcc-8004.3604.1 and Xcc-8004.3605.1 overlap by 4 nucleotidesXcc-8004.3605.1 and Xcc-8004.3607.1 overlap by 4 nucleotides Xcc-8004.3603.1: Xcc-8004.3603.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 3,492,248 to 3,493,297 Xcc-8004.3603.1 Xcc-8004.3604.1: Xcc-8004.3604.1 - COG2907: Amine oxidase, flavin-containing, at 3,493,294 to 3,494,544 Xcc-8004.3604.1 Xcc-8004.3605.1: Xcc-8004.3605.1 - hypothetical protein, at 3,494,541 to 3,495,422 Xcc-8004.3605.1 Xcc-8004.3607.1: Xcc-8004.3607.1 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 3,495,419 to 3,496,714 Xcc-8004.3607.1 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.911 kb on + strand, within Xcc-8004.3603.1at 3493.188 kb on - strand, within Xcc-8004.3603.1at 3493.203 kb on - strandat 3493.399 kb on + strandat 3493.451 kb on - strand, within Xcc-8004.3604.1at 3493.492 kb on + strand, within Xcc-8004.3604.1at 3493.492 kb on + strand, within Xcc-8004.3604.1at 3493.493 kb on - strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.700 kb on + strand, within Xcc-8004.3604.1at 3493.738 kb on + strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.756 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.270 kb on - strand, within Xcc-8004.3604.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.715 kb on + strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.916 kb on + strand, within Xcc-8004.3605.1at 3494.917 kb on - strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.132 kb on + strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,492,555 - Xcc-8004.3603.1 0.29 +0.0
3,492,555 - Xcc-8004.3603.1 0.29 -2.5
3,492,555 - Xcc-8004.3603.1 0.29 -0.7
3,492,587 + Xcc-8004.3603.1 0.32 +0.5
3,492,587 + Xcc-8004.3603.1 0.32 +0.2
3,492,588 - Xcc-8004.3603.1 0.32 -2.3
3,492,588 - Xcc-8004.3603.1 0.32 -0.0
3,492,588 - Xcc-8004.3603.1 0.32 -1.0
3,492,588 - Xcc-8004.3603.1 0.32 -0.7
3,492,588 - Xcc-8004.3603.1 0.32 +0.5
3,492,588 - Xcc-8004.3603.1 0.32 -0.2
3,492,588 - Xcc-8004.3603.1 0.32 +0.0
3,492,588 - Xcc-8004.3603.1 0.32 -0.0
3,492,596 + Xcc-8004.3603.1 0.33 +2.7
3,492,596 + Xcc-8004.3603.1 0.33 +0.8
3,492,596 + Xcc-8004.3603.1 0.33 +0.8
3,492,597 - Xcc-8004.3603.1 0.33 +0.7
3,492,597 - Xcc-8004.3603.1 0.33 +0.1
3,492,911 + Xcc-8004.3603.1 0.63 -1.2
3,493,188 - Xcc-8004.3603.1 0.90 -0.8
3,493,203 - +0.2
3,493,399 + +0.7
3,493,451 - Xcc-8004.3604.1 0.13 +1.0
3,493,492 + Xcc-8004.3604.1 0.16 -1.4
3,493,492 + Xcc-8004.3604.1 0.16 -1.2
3,493,493 - Xcc-8004.3604.1 0.16 +0.8
3,493,588 + Xcc-8004.3604.1 0.24 -1.6
3,493,588 + Xcc-8004.3604.1 0.24 -0.5
3,493,588 + Xcc-8004.3604.1 0.24 -1.6
3,493,588 + Xcc-8004.3604.1 0.24 -1.2
3,493,588 + Xcc-8004.3604.1 0.24 -0.2
3,493,588 + Xcc-8004.3604.1 0.24 +4.0
3,493,588 + Xcc-8004.3604.1 0.24 -0.1
3,493,700 + Xcc-8004.3604.1 0.32 -0.3
3,493,738 + Xcc-8004.3604.1 0.35 +0.7
3,493,739 - Xcc-8004.3604.1 0.36 +2.5
3,493,739 - Xcc-8004.3604.1 0.36 -0.4
3,493,756 + Xcc-8004.3604.1 0.37 +1.0
3,493,936 + Xcc-8004.3604.1 0.51 -0.9
3,493,936 + Xcc-8004.3604.1 0.51 -2.1
3,493,936 + Xcc-8004.3604.1 0.51 -1.9
3,493,936 + Xcc-8004.3604.1 0.51 +1.2
3,493,936 + Xcc-8004.3604.1 0.51 -0.1
3,493,937 - Xcc-8004.3604.1 0.51 -1.5
3,493,937 - Xcc-8004.3604.1 0.51 -1.2
3,493,937 - Xcc-8004.3604.1 0.51 -2.1
3,493,937 - Xcc-8004.3604.1 0.51 -1.0
3,493,937 - Xcc-8004.3604.1 0.51 +0.4
3,493,937 - Xcc-8004.3604.1 0.51 -0.7
3,493,937 - Xcc-8004.3604.1 0.51 +0.2
3,494,066 + Xcc-8004.3604.1 0.62 -0.7
3,494,066 + Xcc-8004.3604.1 0.62 +0.8
3,494,149 + Xcc-8004.3604.1 0.68 +1.0
3,494,149 + Xcc-8004.3604.1 0.68 +2.5
3,494,149 + Xcc-8004.3604.1 0.68 -0.0
3,494,150 - Xcc-8004.3604.1 0.68 -0.3
3,494,150 - Xcc-8004.3604.1 0.68 +0.7
3,494,269 + Xcc-8004.3604.1 0.78 +1.5
3,494,269 + Xcc-8004.3604.1 0.78 -0.6
3,494,270 - Xcc-8004.3604.1 0.78 +1.5
3,494,643 + Xcc-8004.3605.1 0.12 -0.0
3,494,643 + Xcc-8004.3605.1 0.12 +1.5
3,494,643 + Xcc-8004.3605.1 0.12 +0.1
3,494,643 + Xcc-8004.3605.1 0.12 -1.1
3,494,643 + Xcc-8004.3605.1 0.12 -1.9
3,494,644 - Xcc-8004.3605.1 0.12 -0.3
3,494,644 - Xcc-8004.3605.1 0.12 -1.2
3,494,644 - Xcc-8004.3605.1 0.12 +3.8
3,494,644 - Xcc-8004.3605.1 0.12 -1.3
3,494,644 - Xcc-8004.3605.1 0.12 +0.9
3,494,715 + Xcc-8004.3605.1 0.20 -0.3
3,494,716 - Xcc-8004.3605.1 0.20 +1.7
3,494,716 - Xcc-8004.3605.1 0.20 -0.7
3,494,916 + Xcc-8004.3605.1 0.43 -1.0
3,494,917 - Xcc-8004.3605.1 0.43 +0.0
3,494,929 + Xcc-8004.3605.1 0.44 -3.5
3,494,929 + Xcc-8004.3605.1 0.44 -0.2
3,494,929 + Xcc-8004.3605.1 0.44 +2.5
3,494,929 + Xcc-8004.3605.1 0.44 -1.9
3,494,929 + Xcc-8004.3605.1 0.44 -2.1
3,494,929 + Xcc-8004.3605.1 0.44 +0.6
3,494,929 + Xcc-8004.3605.1 0.44 -1.4
3,494,929 + Xcc-8004.3605.1 0.44 -0.9
3,494,930 - Xcc-8004.3605.1 0.44 +0.5
3,494,930 - Xcc-8004.3605.1 0.44 -1.7
3,494,930 - Xcc-8004.3605.1 0.44 -1.0
3,494,949 + Xcc-8004.3605.1 0.46 -0.9
3,494,949 + Xcc-8004.3605.1 0.46 -1.5
3,494,949 + Xcc-8004.3605.1 0.46 -0.8
3,494,949 + Xcc-8004.3605.1 0.46 -1.1
3,494,950 - Xcc-8004.3605.1 0.46 +2.5
3,494,950 - Xcc-8004.3605.1 0.46 -0.3
3,494,950 - Xcc-8004.3605.1 0.46 +0.7
3,494,952 + Xcc-8004.3605.1 0.47 +0.9
3,494,952 + Xcc-8004.3605.1 0.47 -0.9
3,494,952 + Xcc-8004.3605.1 0.47 -1.2
3,494,952 + Xcc-8004.3605.1 0.47 +1.5
3,494,953 - Xcc-8004.3605.1 0.47 -1.5
3,494,953 - Xcc-8004.3605.1 0.47 +0.6
3,495,030 + Xcc-8004.3605.1 0.55 -1.6
3,495,030 + Xcc-8004.3605.1 0.55 +3.6
3,495,030 + Xcc-8004.3605.1 0.55 -1.6
3,495,030 + Xcc-8004.3605.1 0.55 -1.9
3,495,030 + Xcc-8004.3605.1 0.55 +0.5
3,495,030 + Xcc-8004.3605.1 0.55 -0.2
3,495,030 + Xcc-8004.3605.1 0.55 +0.5
3,495,030 + Xcc-8004.3605.1 0.55 -0.6
3,495,030 + Xcc-8004.3605.1 0.55 -1.0
3,495,030 + Xcc-8004.3605.1 0.55 -0.2
3,495,030 + Xcc-8004.3605.1 0.55 -2.0
3,495,030 + Xcc-8004.3605.1 0.55 -0.3
3,495,031 - Xcc-8004.3605.1 0.56 -1.1
3,495,031 - Xcc-8004.3605.1 0.56 +0.7
3,495,031 - Xcc-8004.3605.1 0.56 -0.5
3,495,031 - Xcc-8004.3605.1 0.56 -0.7
3,495,031 - Xcc-8004.3605.1 0.56 +1.2
3,495,132 + Xcc-8004.3605.1 0.67 -0.5
3,495,133 - Xcc-8004.3605.1 0.67 -0.4
3,495,133 - Xcc-8004.3605.1 0.67 -2.5

Or see this region's nucleotide sequence