Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3381.1 and Xcc-8004.3382.1 are separated by 83 nucleotides Xcc-8004.3382.1 and Xcc-8004.3383.1 are separated by 173 nucleotides Xcc-8004.3383.1 and Xcc-8004.3385.1 overlap by 4 nucleotides Xcc-8004.3385.1 and Xcc-8004.3386.1 overlap by 4 nucleotides
Xcc-8004.3381.1: Xcc-8004.3381.1 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 3,274,387 to 3,277,143
Xcc-8004.3381.1
Xcc-8004.3382.1: Xcc-8004.3382.1 - FIG01209963: hypothetical protein, at 3,277,227 to 3,277,385
Xcc-8004.3382.1
Xcc-8004.3383.1: Xcc-8004.3383.1 - D-mannose isomerase (EC 5.3.1.7), at 3,277,559 to 3,278,764
Xcc-8004.3383.1
Xcc-8004.3385.1: Xcc-8004.3385.1 - Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4), at 3,278,761 to 3,279,747
Xcc-8004.3385.1
Xcc-8004.3386.1: Xcc-8004.3386.1 - Predicted mannose transporter, GGP family, at 3,279,744 to 3,281,054
Xcc-8004.3386.1
Position (kb) 3277
3278
3279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3276.706 kb on + strand, within Xcc-8004.3381.1 at 3276.706 kb on + strand, within Xcc-8004.3381.1 at 3276.707 kb on - strand, within Xcc-8004.3381.1 at 3276.707 kb on - strand, within Xcc-8004.3381.1 at 3276.707 kb on - strand, within Xcc-8004.3381.1 at 3276.707 kb on - strand, within Xcc-8004.3381.1 at 3276.799 kb on + strand, within Xcc-8004.3381.1 at 3276.799 kb on + strand, within Xcc-8004.3381.1 at 3276.799 kb on + strand, within Xcc-8004.3381.1 at 3276.800 kb on - strand, within Xcc-8004.3381.1 at 3276.800 kb on - strand, within Xcc-8004.3381.1 at 3276.855 kb on + strand, within Xcc-8004.3381.1 at 3277.000 kb on + strand at 3277.001 kb on - strand at 3277.001 kb on - strand at 3277.001 kb on - strand at 3277.024 kb on + strand at 3277.025 kb on - strand at 3277.066 kb on + strand at 3277.130 kb on - strand at 3277.211 kb on - strand at 3277.220 kb on + strand at 3277.220 kb on + strand at 3277.221 kb on - strand at 3277.229 kb on - strand at 3277.453 kb on - strand at 3277.483 kb on + strand at 3277.483 kb on + strand at 3277.483 kb on + strand at 3277.593 kb on + strand at 3277.594 kb on - strand at 3277.594 kb on - strand at 3277.594 kb on - strand at 3277.650 kb on + strand at 3277.650 kb on + strand at 3277.651 kb on - strand at 3277.651 kb on - strand at 3277.680 kb on + strand, within Xcc-8004.3383.1 at 3277.722 kb on + strand, within Xcc-8004.3383.1 at 3277.741 kb on - strand, within Xcc-8004.3383.1 at 3277.753 kb on - strand, within Xcc-8004.3383.1 at 3277.821 kb on + strand, within Xcc-8004.3383.1 at 3277.821 kb on + strand, within Xcc-8004.3383.1 at 3277.821 kb on + strand, within Xcc-8004.3383.1 at 3277.822 kb on - strand, within Xcc-8004.3383.1 at 3277.822 kb on - strand, within Xcc-8004.3383.1 at 3277.863 kb on + strand, within Xcc-8004.3383.1 at 3277.864 kb on - strand, within Xcc-8004.3383.1 at 3277.866 kb on + strand, within Xcc-8004.3383.1 at 3277.867 kb on - strand, within Xcc-8004.3383.1 at 3277.867 kb on - strand, within Xcc-8004.3383.1 at 3277.867 kb on - strand, within Xcc-8004.3383.1 at 3277.867 kb on - strand, within Xcc-8004.3383.1 at 3278.082 kb on + strand, within Xcc-8004.3383.1 at 3278.082 kb on + strand, within Xcc-8004.3383.1 at 3278.163 kb on + strand, within Xcc-8004.3383.1 at 3278.164 kb on - strand, within Xcc-8004.3383.1 at 3278.164 kb on - strand, within Xcc-8004.3383.1 at 3278.187 kb on + strand, within Xcc-8004.3383.1 at 3278.406 kb on + strand, within Xcc-8004.3383.1 at 3278.477 kb on - strand, within Xcc-8004.3383.1 at 3278.497 kb on - strand, within Xcc-8004.3383.1 at 3278.526 kb on + strand, within Xcc-8004.3383.1 at 3278.562 kb on + strand, within Xcc-8004.3383.1 at 3278.562 kb on + strand, within Xcc-8004.3383.1 at 3278.562 kb on + strand, within Xcc-8004.3383.1 at 3278.613 kb on + strand, within Xcc-8004.3383.1 at 3278.638 kb on - strand, within Xcc-8004.3383.1 at 3278.679 kb on + strand at 3278.679 kb on + strand at 3278.679 kb on + strand at 3278.679 kb on + strand at 3278.680 kb on - strand at 3278.680 kb on - strand at 3278.680 kb on - strand at 3278.680 kb on - strand at 3279.137 kb on + strand, within Xcc-8004.3385.1 at 3279.422 kb on + strand, within Xcc-8004.3385.1 at 3279.422 kb on + strand, within Xcc-8004.3385.1 at 3279.423 kb on - strand, within Xcc-8004.3385.1 at 3279.423 kb on - strand, within Xcc-8004.3385.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 3,276,706 + Xcc-8004.3381.1 0.84 +1.4 3,276,706 + Xcc-8004.3381.1 0.84 +0.6 3,276,707 - Xcc-8004.3381.1 0.84 -1.4 3,276,707 - Xcc-8004.3381.1 0.84 -0.6 3,276,707 - Xcc-8004.3381.1 0.84 -1.6 3,276,707 - Xcc-8004.3381.1 0.84 +0.1 3,276,799 + Xcc-8004.3381.1 0.87 +2.1 3,276,799 + Xcc-8004.3381.1 0.87 +0.4 3,276,799 + Xcc-8004.3381.1 0.87 +1.1 3,276,800 - Xcc-8004.3381.1 0.88 -1.7 3,276,800 - Xcc-8004.3381.1 0.88 -0.5 3,276,855 + Xcc-8004.3381.1 0.90 -0.2 3,277,000 + -0.9 3,277,001 - +0.7 3,277,001 - -1.9 3,277,001 - +0.9 3,277,024 + -0.2 3,277,025 - -0.6 3,277,066 + -0.6 3,277,130 - +0.4 3,277,211 - -0.2 3,277,220 + +0.4 3,277,220 + +0.4 3,277,221 - -0.6 3,277,229 - -1.4 3,277,453 - +0.1 3,277,483 + -1.2 3,277,483 + +0.8 3,277,483 + -1.3 3,277,593 + -1.3 3,277,594 - +2.4 3,277,594 - +0.2 3,277,594 - +0.6 3,277,650 + -0.2 3,277,650 + -1.3 3,277,651 - +1.5 3,277,651 - +0.9 3,277,680 + Xcc-8004.3383.1 0.10 -0.0 3,277,722 + Xcc-8004.3383.1 0.14 +1.8 3,277,741 - Xcc-8004.3383.1 0.15 -1.2 3,277,753 - Xcc-8004.3383.1 0.16 +2.1 3,277,821 + Xcc-8004.3383.1 0.22 -2.3 3,277,821 + Xcc-8004.3383.1 0.22 -0.8 3,277,821 + Xcc-8004.3383.1 0.22 +1.4 3,277,822 - Xcc-8004.3383.1 0.22 -3.1 3,277,822 - Xcc-8004.3383.1 0.22 +1.4 3,277,863 + Xcc-8004.3383.1 0.25 +0.9 3,277,864 - Xcc-8004.3383.1 0.25 +0.1 3,277,866 + Xcc-8004.3383.1 0.25 -2.7 3,277,867 - Xcc-8004.3383.1 0.26 -0.7 3,277,867 - Xcc-8004.3383.1 0.26 -0.9 3,277,867 - Xcc-8004.3383.1 0.26 -0.1 3,277,867 - Xcc-8004.3383.1 0.26 -1.4 3,278,082 + Xcc-8004.3383.1 0.43 +1.0 3,278,082 + Xcc-8004.3383.1 0.43 -0.7 3,278,163 + Xcc-8004.3383.1 0.50 +0.4 3,278,164 - Xcc-8004.3383.1 0.50 -0.7 3,278,164 - Xcc-8004.3383.1 0.50 -0.3 3,278,187 + Xcc-8004.3383.1 0.52 -0.5 3,278,406 + Xcc-8004.3383.1 0.70 +0.1 3,278,477 - Xcc-8004.3383.1 0.76 -0.8 3,278,497 - Xcc-8004.3383.1 0.78 -0.8 3,278,526 + Xcc-8004.3383.1 0.80 +0.4 3,278,562 + Xcc-8004.3383.1 0.83 -0.7 3,278,562 + Xcc-8004.3383.1 0.83 +0.9 3,278,562 + Xcc-8004.3383.1 0.83 +3.0 3,278,613 + Xcc-8004.3383.1 0.87 +1.6 3,278,638 - Xcc-8004.3383.1 0.89 +0.1 3,278,679 + +0.2 3,278,679 + +1.3 3,278,679 + -0.6 3,278,679 + +3.9 3,278,680 - -0.9 3,278,680 - +1.4 3,278,680 - +0.2 3,278,680 - +3.2 3,279,137 + Xcc-8004.3385.1 0.38 +1.1 3,279,422 + Xcc-8004.3385.1 0.67 -1.5 3,279,422 + Xcc-8004.3385.1 0.67 -0.8 3,279,423 - Xcc-8004.3385.1 0.67 -1.9 3,279,423 - Xcc-8004.3385.1 0.67 +0.9
Or see this region's nucleotide sequence