Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3150.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3148.1 and Xcc-8004.3150.1 are separated by 263 nucleotidesXcc-8004.3150.1 and Xcc-8004.3151.1 are separated by 130 nucleotides Xcc-8004.3148.1: Xcc-8004.3148.1 - Topoisomerase IV subunit B (EC 5.99.1.-), at 3,066,305 to 3,068,194 Xcc-8004.3148.1 Xcc-8004.3150.1: Xcc-8004.3150.1 - CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26), at 3,068,458 to 3,069,255 Xcc-8004.3150.1 Xcc-8004.3151.1: Xcc-8004.3151.1 - Carboxypeptidase C (cathepsin A), at 3,069,386 to 3,070,882 Xcc-8004.3151.1 Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3068.192 kb on + strandat 3068.192 kb on + strandat 3068.347 kb on + strandat 3068.347 kb on + strandat 3068.348 kb on - strandat 3068.627 kb on + strand, within Xcc-8004.3150.1at 3068.720 kb on + strand, within Xcc-8004.3150.1at 3068.720 kb on + strand, within Xcc-8004.3150.1at 3068.720 kb on + strand, within Xcc-8004.3150.1at 3068.720 kb on + strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.721 kb on - strand, within Xcc-8004.3150.1at 3068.798 kb on + strand, within Xcc-8004.3150.1at 3068.798 kb on + strand, within Xcc-8004.3150.1at 3068.798 kb on + strand, within Xcc-8004.3150.1at 3068.798 kb on + strand, within Xcc-8004.3150.1at 3068.799 kb on - strand, within Xcc-8004.3150.1at 3068.799 kb on - strand, within Xcc-8004.3150.1at 3068.799 kb on - strand, within Xcc-8004.3150.1at 3068.882 kb on + strand, within Xcc-8004.3150.1at 3068.882 kb on + strand, within Xcc-8004.3150.1at 3068.882 kb on + strand, within Xcc-8004.3150.1at 3068.883 kb on - strand, within Xcc-8004.3150.1at 3068.951 kb on + strand, within Xcc-8004.3150.1at 3068.951 kb on + strand, within Xcc-8004.3150.1at 3068.952 kb on - strand, within Xcc-8004.3150.1at 3068.952 kb on - strand, within Xcc-8004.3150.1at 3068.952 kb on - strand, within Xcc-8004.3150.1at 3068.952 kb on - strand, within Xcc-8004.3150.1at 3068.975 kb on - strand, within Xcc-8004.3150.1at 3069.024 kb on - strand, within Xcc-8004.3150.1at 3069.024 kb on - strand, within Xcc-8004.3150.1at 3069.024 kb on - strand, within Xcc-8004.3150.1at 3069.052 kb on + strand, within Xcc-8004.3150.1at 3069.052 kb on + strand, within Xcc-8004.3150.1at 3069.053 kb on - strand, within Xcc-8004.3150.1at 3069.279 kb on + strandat 3069.279 kb on + strandat 3069.280 kb on - strandat 3069.280 kb on - strandat 3069.280 kb on - strandat 3069.352 kb on + strandat 3069.352 kb on + strandat 3069.353 kb on - strandat 3069.353 kb on - strandat 3069.645 kb on - strand, within Xcc-8004.3151.1at 3069.713 kb on + strand, within Xcc-8004.3151.1at 3069.713 kb on + strand, within Xcc-8004.3151.1at 3069.713 kb on + strand, within Xcc-8004.3151.1at 3069.714 kb on - strand, within Xcc-8004.3151.1at 3069.714 kb on - strand, within Xcc-8004.3151.1at 3069.905 kb on + strand, within Xcc-8004.3151.1at 3069.905 kb on + strand, within Xcc-8004.3151.1at 3069.905 kb on + strand, within Xcc-8004.3151.1at 3069.905 kb on + strand, within Xcc-8004.3151.1at 3069.906 kb on - strand, within Xcc-8004.3151.1at 3069.906 kb on - strand, within Xcc-8004.3151.1at 3069.906 kb on - strand, within Xcc-8004.3151.1at 3069.929 kb on + strand, within Xcc-8004.3151.1at 3069.930 kb on - strand, within Xcc-8004.3151.1at 3069.930 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.990 kb on - strand, within Xcc-8004.3151.1at 3069.990 kb on - strand, within Xcc-8004.3151.1at 3070.007 kb on + strand, within Xcc-8004.3151.1at 3070.007 kb on + strand, within Xcc-8004.3151.1at 3070.008 kb on - strand, within Xcc-8004.3151.1at 3070.040 kb on + strand, within Xcc-8004.3151.1at 3070.229 kb on + strand, within Xcc-8004.3151.1at 3070.230 kb on - strand, within Xcc-8004.3151.1at 3070.230 kb on - strand, within Xcc-8004.3151.1at 3070.245 kb on - strand, within Xcc-8004.3151.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,068,192 + +0.6
3,068,192 + +1.3
3,068,347 + -2.4
3,068,347 + -0.1
3,068,348 - -1.4
3,068,627 + Xcc-8004.3150.1 0.21 -1.0
3,068,720 + Xcc-8004.3150.1 0.33 +0.9
3,068,720 + Xcc-8004.3150.1 0.33 +0.9
3,068,720 + Xcc-8004.3150.1 0.33 +0.2
3,068,720 + Xcc-8004.3150.1 0.33 -0.6
3,068,721 - Xcc-8004.3150.1 0.33 -1.1
3,068,721 - Xcc-8004.3150.1 0.33 +0.3
3,068,721 - Xcc-8004.3150.1 0.33 -0.7
3,068,721 - Xcc-8004.3150.1 0.33 +2.9
3,068,721 - Xcc-8004.3150.1 0.33 -0.5
3,068,721 - Xcc-8004.3150.1 0.33 +1.3
3,068,721 - Xcc-8004.3150.1 0.33 -0.5
3,068,798 + Xcc-8004.3150.1 0.43 -1.5
3,068,798 + Xcc-8004.3150.1 0.43 -2.4
3,068,798 + Xcc-8004.3150.1 0.43 -0.1
3,068,798 + Xcc-8004.3150.1 0.43 +0.3
3,068,799 - Xcc-8004.3150.1 0.43 -1.8
3,068,799 - Xcc-8004.3150.1 0.43 +0.9
3,068,799 - Xcc-8004.3150.1 0.43 +0.8
3,068,882 + Xcc-8004.3150.1 0.53 +0.4
3,068,882 + Xcc-8004.3150.1 0.53 -0.7
3,068,882 + Xcc-8004.3150.1 0.53 +0.3
3,068,883 - Xcc-8004.3150.1 0.53 -0.7
3,068,951 + Xcc-8004.3150.1 0.62 -0.7
3,068,951 + Xcc-8004.3150.1 0.62 -0.2
3,068,952 - Xcc-8004.3150.1 0.62 -0.4
3,068,952 - Xcc-8004.3150.1 0.62 -0.9
3,068,952 - Xcc-8004.3150.1 0.62 +0.8
3,068,952 - Xcc-8004.3150.1 0.62 -0.4
3,068,975 - Xcc-8004.3150.1 0.65 +0.3
3,069,024 - Xcc-8004.3150.1 0.71 -0.4
3,069,024 - Xcc-8004.3150.1 0.71 +0.3
3,069,024 - Xcc-8004.3150.1 0.71 +0.3
3,069,052 + Xcc-8004.3150.1 0.74 +0.4
3,069,052 + Xcc-8004.3150.1 0.74 -0.3
3,069,053 - Xcc-8004.3150.1 0.75 +0.2
3,069,279 + -1.6
3,069,279 + +0.8
3,069,280 - -2.4
3,069,280 - -0.8
3,069,280 - +0.3
3,069,352 + -0.2
3,069,352 + -2.8
3,069,353 - +0.7
3,069,353 - +2.3
3,069,645 - Xcc-8004.3151.1 0.17 -2.2
3,069,713 + Xcc-8004.3151.1 0.22 -0.3
3,069,713 + Xcc-8004.3151.1 0.22 +1.6
3,069,713 + Xcc-8004.3151.1 0.22 +1.8
3,069,714 - Xcc-8004.3151.1 0.22 +0.4
3,069,714 - Xcc-8004.3151.1 0.22 +1.4
3,069,905 + Xcc-8004.3151.1 0.35 +0.4
3,069,905 + Xcc-8004.3151.1 0.35 -0.4
3,069,905 + Xcc-8004.3151.1 0.35 -0.3
3,069,905 + Xcc-8004.3151.1 0.35 -1.3
3,069,906 - Xcc-8004.3151.1 0.35 -2.4
3,069,906 - Xcc-8004.3151.1 0.35 +0.4
3,069,906 - Xcc-8004.3151.1 0.35 -0.3
3,069,929 + Xcc-8004.3151.1 0.36 +0.2
3,069,930 - Xcc-8004.3151.1 0.36 -0.7
3,069,930 - Xcc-8004.3151.1 0.36 +0.4
3,069,948 - Xcc-8004.3151.1 0.38 -2.1
3,069,948 - Xcc-8004.3151.1 0.38 -1.2
3,069,948 - Xcc-8004.3151.1 0.38 +0.6
3,069,948 - Xcc-8004.3151.1 0.38 +2.7
3,069,989 + Xcc-8004.3151.1 0.40 +0.3
3,069,989 + Xcc-8004.3151.1 0.40 +1.4
3,069,989 + Xcc-8004.3151.1 0.40 -0.3
3,069,990 - Xcc-8004.3151.1 0.40 -0.5
3,069,990 - Xcc-8004.3151.1 0.40 +0.5
3,070,007 + Xcc-8004.3151.1 0.41 -0.6
3,070,007 + Xcc-8004.3151.1 0.41 +0.8
3,070,008 - Xcc-8004.3151.1 0.42 +1.1
3,070,040 + Xcc-8004.3151.1 0.44 +0.5
3,070,229 + Xcc-8004.3151.1 0.56 -0.6
3,070,230 - Xcc-8004.3151.1 0.56 -0.4
3,070,230 - Xcc-8004.3151.1 0.56 +1.2
3,070,245 - Xcc-8004.3151.1 0.57 -0.4

Or see this region's nucleotide sequence