Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1575.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1573.1 and Xcc-8004.1575.1 are separated by 339 nucleotidesXcc-8004.1575.1 and Xcc-8004.1576.1 are separated by 56 nucleotides Xcc-8004.1573.1: Xcc-8004.1573.1 - Beta-lactamase (EC 3.5.2.6), at 1,509,985 to 1,511,364 Xcc-8004.1573.1 Xcc-8004.1575.1: Xcc-8004.1575.1 - FIG01209855: hypothetical protein, at 1,511,704 to 1,513,068 Xcc-8004.1575.1 Xcc-8004.1576.1: Xcc-8004.1576.1 - FIG01211374: hypothetical protein, at 1,513,125 to 1,513,478 Xcc-8004.1576.1 Position (kb) 1511 1512 1513 1514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1510.704 kb on - strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.709 kb on + strand, within Xcc-8004.1573.1at 1510.710 kb on - strand, within Xcc-8004.1573.1at 1510.710 kb on - strand, within Xcc-8004.1573.1at 1510.710 kb on - strand, within Xcc-8004.1573.1at 1510.710 kb on - strand, within Xcc-8004.1573.1at 1510.769 kb on + strand, within Xcc-8004.1573.1at 1510.895 kb on + strand, within Xcc-8004.1573.1at 1510.895 kb on + strand, within Xcc-8004.1573.1at 1510.896 kb on - strand, within Xcc-8004.1573.1at 1510.896 kb on - strand, within Xcc-8004.1573.1at 1510.896 kb on - strand, within Xcc-8004.1573.1at 1511.099 kb on - strand, within Xcc-8004.1573.1at 1511.099 kb on - strand, within Xcc-8004.1573.1at 1511.111 kb on + strand, within Xcc-8004.1573.1at 1511.112 kb on - strand, within Xcc-8004.1573.1at 1511.112 kb on - strand, within Xcc-8004.1573.1at 1511.112 kb on - strand, within Xcc-8004.1573.1at 1511.112 kb on - strand, within Xcc-8004.1573.1at 1511.250 kb on + strandat 1511.250 kb on + strandat 1511.250 kb on + strandat 1511.251 kb on - strandat 1511.353 kb on + strandat 1511.353 kb on + strandat 1511.400 kb on + strandat 1511.401 kb on - strandat 1511.419 kb on - strandat 1511.451 kb on + strandat 1511.460 kb on + strandat 1511.460 kb on + strandat 1511.460 kb on + strandat 1511.461 kb on - strandat 1511.582 kb on - strandat 1511.797 kb on + strandat 1511.797 kb on + strandat 1511.797 kb on + strandat 1511.797 kb on + strandat 1511.798 kb on - strandat 1511.821 kb on + strandat 1511.822 kb on - strandat 1511.822 kb on - strandat 1511.824 kb on + strandat 1511.824 kb on + strandat 1511.824 kb on + strandat 1511.825 kb on - strandat 1511.825 kb on - strandat 1511.955 kb on + strand, within Xcc-8004.1575.1at 1511.996 kb on - strand, within Xcc-8004.1575.1at 1511.996 kb on - strand, within Xcc-8004.1575.1at 1512.044 kb on + strand, within Xcc-8004.1575.1at 1512.044 kb on + strand, within Xcc-8004.1575.1at 1512.045 kb on - strand, within Xcc-8004.1575.1at 1512.046 kb on + strand, within Xcc-8004.1575.1at 1512.046 kb on + strand, within Xcc-8004.1575.1at 1512.047 kb on - strand, within Xcc-8004.1575.1at 1512.057 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.079 kb on + strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.080 kb on - strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.214 kb on + strand, within Xcc-8004.1575.1at 1512.215 kb on - strand, within Xcc-8004.1575.1at 1512.215 kb on - strand, within Xcc-8004.1575.1at 1512.223 kb on + strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.224 kb on - strand, within Xcc-8004.1575.1at 1512.225 kb on + strand, within Xcc-8004.1575.1at 1512.226 kb on - strand, within Xcc-8004.1575.1at 1512.348 kb on - strand, within Xcc-8004.1575.1at 1512.526 kb on + strand, within Xcc-8004.1575.1at 1512.526 kb on + strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.527 kb on - strand, within Xcc-8004.1575.1at 1512.559 kb on + strand, within Xcc-8004.1575.1at 1512.560 kb on - strand, within Xcc-8004.1575.1at 1512.561 kb on + strand, within Xcc-8004.1575.1at 1512.562 kb on - strand, within Xcc-8004.1575.1at 1512.589 kb on + strand, within Xcc-8004.1575.1at 1512.589 kb on + strand, within Xcc-8004.1575.1at 1512.823 kb on + strand, within Xcc-8004.1575.1at 1512.823 kb on + strand, within Xcc-8004.1575.1at 1512.824 kb on - strand, within Xcc-8004.1575.1at 1512.824 kb on - strand, within Xcc-8004.1575.1at 1512.850 kb on + strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.851 kb on - strand, within Xcc-8004.1575.1at 1512.884 kb on - strand, within Xcc-8004.1575.1at 1512.884 kb on - strand, within Xcc-8004.1575.1at 1513.091 kb on + strandat 1513.091 kb on + strandat 1513.092 kb on - strandat 1513.104 kb on - strandat 1513.104 kb on - strandat 1513.124 kb on + strandat 1513.124 kb on + strandat 1513.125 kb on - strandat 1513.125 kb on - strandat 1513.125 kb on - strandat 1513.176 kb on + strand, within Xcc-8004.1576.1at 1513.176 kb on + strand, within Xcc-8004.1576.1at 1513.177 kb on - strand, within Xcc-8004.1576.1at 1513.177 kb on - strand, within Xcc-8004.1576.1at 1513.291 kb on - strand, within Xcc-8004.1576.1at 1513.398 kb on + strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.399 kb on - strand, within Xcc-8004.1576.1at 1513.485 kb on + strandat 1513.647 kb on + strandat 1513.920 kb on + strandat 1513.920 kb on + strandat 1513.920 kb on + strandat 1513.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
remove
1,510,704 - Xcc-8004.1573.1 0.52 -1.2
1,510,709 + Xcc-8004.1573.1 0.52 +1.0
1,510,709 + Xcc-8004.1573.1 0.52 +1.6
1,510,709 + Xcc-8004.1573.1 0.52 -1.0
1,510,709 + Xcc-8004.1573.1 0.52 -1.3
1,510,709 + Xcc-8004.1573.1 0.52 -1.1
1,510,709 + Xcc-8004.1573.1 0.52 -1.5
1,510,709 + Xcc-8004.1573.1 0.52 -1.5
1,510,710 - Xcc-8004.1573.1 0.53 -2.3
1,510,710 - Xcc-8004.1573.1 0.53 -1.7
1,510,710 - Xcc-8004.1573.1 0.53 -0.4
1,510,710 - Xcc-8004.1573.1 0.53 +0.1
1,510,769 + Xcc-8004.1573.1 0.57 -1.3
1,510,895 + Xcc-8004.1573.1 0.66 +0.0
1,510,895 + Xcc-8004.1573.1 0.66 -1.0
1,510,896 - Xcc-8004.1573.1 0.66 -0.5
1,510,896 - Xcc-8004.1573.1 0.66 +0.1
1,510,896 - Xcc-8004.1573.1 0.66 -1.4
1,511,099 - Xcc-8004.1573.1 0.81 -1.8
1,511,099 - Xcc-8004.1573.1 0.81 -0.1
1,511,111 + Xcc-8004.1573.1 0.82 +1.3
1,511,112 - Xcc-8004.1573.1 0.82 -2.8
1,511,112 - Xcc-8004.1573.1 0.82 -1.6
1,511,112 - Xcc-8004.1573.1 0.82 -1.8
1,511,112 - Xcc-8004.1573.1 0.82 +0.9
1,511,250 + +1.5
1,511,250 + -0.9
1,511,250 + -0.9
1,511,251 - +1.0
1,511,353 + -2.1
1,511,353 + +0.2
1,511,400 + +0.8
1,511,401 - +3.1
1,511,419 - +1.8
1,511,451 + -0.1
1,511,460 + +0.7
1,511,460 + -0.1
1,511,460 + +3.8
1,511,461 - -0.2
1,511,582 - -0.3
1,511,797 + +0.8
1,511,797 + -0.8
1,511,797 + -0.1
1,511,797 + -0.5
1,511,798 - +1.5
1,511,821 + -2.6
1,511,822 - -1.4
1,511,822 - +0.7
1,511,824 + -0.5
1,511,824 + -0.0
1,511,824 + -0.8
1,511,825 - -1.1
1,511,825 - -0.3
1,511,955 + Xcc-8004.1575.1 0.18 -0.1
1,511,996 - Xcc-8004.1575.1 0.21 +1.2
1,511,996 - Xcc-8004.1575.1 0.21 -1.6
1,512,044 + Xcc-8004.1575.1 0.25 +0.1
1,512,044 + Xcc-8004.1575.1 0.25 -0.3
1,512,045 - Xcc-8004.1575.1 0.25 -2.2
1,512,046 + Xcc-8004.1575.1 0.25 +0.2
1,512,046 + Xcc-8004.1575.1 0.25 +1.4
1,512,047 - Xcc-8004.1575.1 0.25 -2.0
1,512,057 + Xcc-8004.1575.1 0.26 -0.7
1,512,079 + Xcc-8004.1575.1 0.27 -1.3
1,512,079 + Xcc-8004.1575.1 0.27 +0.5
1,512,079 + Xcc-8004.1575.1 0.27 -0.0
1,512,079 + Xcc-8004.1575.1 0.27 -0.8
1,512,079 + Xcc-8004.1575.1 0.27 -0.2
1,512,079 + Xcc-8004.1575.1 0.27 +0.5
1,512,079 + Xcc-8004.1575.1 0.27 -0.7
1,512,079 + Xcc-8004.1575.1 0.27 -1.1
1,512,079 + Xcc-8004.1575.1 0.27 -0.9
1,512,080 - Xcc-8004.1575.1 0.28 -2.7
1,512,080 - Xcc-8004.1575.1 0.28 -0.8
1,512,080 - Xcc-8004.1575.1 0.28 +1.5
1,512,080 - Xcc-8004.1575.1 0.28 -1.8
1,512,080 - Xcc-8004.1575.1 0.28 -1.0
1,512,080 - Xcc-8004.1575.1 0.28 +1.5
1,512,080 - Xcc-8004.1575.1 0.28 -0.5
1,512,080 - Xcc-8004.1575.1 0.28 +0.1
1,512,080 - Xcc-8004.1575.1 0.28 +0.3
1,512,080 - Xcc-8004.1575.1 0.28 -0.5
1,512,080 - Xcc-8004.1575.1 0.28 +2.6
1,512,214 + Xcc-8004.1575.1 0.37 +0.0
1,512,214 + Xcc-8004.1575.1 0.37 -0.3
1,512,214 + Xcc-8004.1575.1 0.37 -1.5
1,512,214 + Xcc-8004.1575.1 0.37 +0.5
1,512,214 + Xcc-8004.1575.1 0.37 +1.1
1,512,215 - Xcc-8004.1575.1 0.37 +3.2
1,512,215 - Xcc-8004.1575.1 0.37 -1.1
1,512,223 + Xcc-8004.1575.1 0.38 +1.1
1,512,224 - Xcc-8004.1575.1 0.38 -0.3
1,512,224 - Xcc-8004.1575.1 0.38 -0.3
1,512,224 - Xcc-8004.1575.1 0.38 +1.1
1,512,225 + Xcc-8004.1575.1 0.38 -2.7
1,512,226 - Xcc-8004.1575.1 0.38 -0.1
1,512,348 - Xcc-8004.1575.1 0.47 -0.6
1,512,526 + Xcc-8004.1575.1 0.60 -2.1
1,512,526 + Xcc-8004.1575.1 0.60 +0.3
1,512,527 - Xcc-8004.1575.1 0.60 -0.1
1,512,527 - Xcc-8004.1575.1 0.60 -1.5
1,512,527 - Xcc-8004.1575.1 0.60 -2.8
1,512,559 + Xcc-8004.1575.1 0.63 -0.2
1,512,560 - Xcc-8004.1575.1 0.63 -1.0
1,512,561 + Xcc-8004.1575.1 0.63 -0.3
1,512,562 - Xcc-8004.1575.1 0.63 +0.7
1,512,589 + Xcc-8004.1575.1 0.65 -1.0
1,512,589 + Xcc-8004.1575.1 0.65 +0.1
1,512,823 + Xcc-8004.1575.1 0.82 +2.1
1,512,823 + Xcc-8004.1575.1 0.82 -1.7
1,512,824 - Xcc-8004.1575.1 0.82 +0.3
1,512,824 - Xcc-8004.1575.1 0.82 +0.6
1,512,850 + Xcc-8004.1575.1 0.84 -0.5
1,512,851 - Xcc-8004.1575.1 0.84 -0.3
1,512,851 - Xcc-8004.1575.1 0.84 +1.3
1,512,851 - Xcc-8004.1575.1 0.84 +2.1
1,512,884 - Xcc-8004.1575.1 0.86 -0.1
1,512,884 - Xcc-8004.1575.1 0.86 +0.0
1,513,091 + -0.1
1,513,091 + -1.3
1,513,092 - +0.5
1,513,104 - +0.1
1,513,104 - +0.2
1,513,124 + -0.5
1,513,124 + -1.8
1,513,125 - -0.3
1,513,125 - -0.9
1,513,125 - -0.3
1,513,176 + Xcc-8004.1576.1 0.14 -1.9
1,513,176 + Xcc-8004.1576.1 0.14 -1.0
1,513,177 - Xcc-8004.1576.1 0.15 +2.2
1,513,177 - Xcc-8004.1576.1 0.15 -3.4
1,513,291 - Xcc-8004.1576.1 0.47 -0.8
1,513,398 + Xcc-8004.1576.1 0.77 -0.8
1,513,399 - Xcc-8004.1576.1 0.77 +1.6
1,513,399 - Xcc-8004.1576.1 0.77 -1.8
1,513,399 - Xcc-8004.1576.1 0.77 -0.5
1,513,485 + +0.0
1,513,647 + +0.8
1,513,920 + -1.2
1,513,920 + -0.8
1,513,920 + -1.0
1,513,921 - -0.8

Or see this region's nucleotide sequence