Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23200

Experiment: water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23190 and RS_RS23195 are separated by 75 nucleotidesRS_RS23195 and RS_RS23200 are separated by 4 nucleotidesRS_RS23200 and RS_RS23205 are separated by 131 nucleotides RS_RS23190: RS_RS23190 - toxin HipA, at 1,589,090 to 1,590,438 _RS23190 RS_RS23195: RS_RS23195 - DUF2236 domain-containing protein, at 1,590,514 to 1,591,410 _RS23195 RS_RS23200: RS_RS23200 - MFS transporter, at 1,591,415 to 1,592,938 _RS23200 RS_RS23205: RS_RS23205 - LysR family transcriptional regulator, at 1,593,070 to 1,594,020 _RS23205 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -1 0 1at 1590.487 kb on + strandat 1590.488 kb on - strandat 1590.820 kb on + strand, within RS_RS23195at 1590.821 kb on - strand, within RS_RS23195at 1590.821 kb on - strand, within RS_RS23195at 1590.821 kb on - strand, within RS_RS23195at 1590.979 kb on + strand, within RS_RS23195at 1590.988 kb on + strand, within RS_RS23195at 1590.988 kb on + strand, within RS_RS23195at 1590.989 kb on - strand, within RS_RS23195at 1590.989 kb on - strand, within RS_RS23195at 1591.028 kb on - strand, within RS_RS23195at 1591.105 kb on + strand, within RS_RS23195at 1591.106 kb on - strand, within RS_RS23195at 1591.408 kb on + strandat 1591.408 kb on + strandat 1591.409 kb on - strandat 1591.409 kb on - strandat 1591.409 kb on - strandat 1591.924 kb on - strand, within RS_RS23200at 1592.433 kb on + strand, within RS_RS23200at 1592.433 kb on + strand, within RS_RS23200at 1592.433 kb on + strand, within RS_RS23200at 1592.433 kb on + strand, within RS_RS23200at 1592.433 kb on + strand, within RS_RS23200at 1592.434 kb on - strand, within RS_RS23200at 1592.434 kb on - strand, within RS_RS23200at 1592.499 kb on + strand, within RS_RS23200at 1592.499 kb on + strand, within RS_RS23200at 1592.500 kb on - strand, within RS_RS23200at 1592.718 kb on + strand, within RS_RS23200at 1592.719 kb on - strand, within RS_RS23200at 1592.719 kb on - strand, within RS_RS23200at 1592.719 kb on - strand, within RS_RS23200at 1592.719 kb on - strand, within RS_RS23200at 1592.719 kb on - strand, within RS_RS23200at 1592.751 kb on + strand, within RS_RS23200at 1592.752 kb on - strand, within RS_RS23200at 1592.752 kb on - strand, within RS_RS23200at 1593.043 kb on + strandat 1593.044 kb on - strandat 1593.044 kb on - strandat 1593.044 kb on - strandat 1593.044 kb on - strandat 1593.044 kb on - strandat 1593.044 kb on - strandat 1593.372 kb on - strand, within RS_RS23205at 1593.372 kb on - strand, within RS_RS23205at 1593.372 kb on - strand, within RS_RS23205at 1593.605 kb on + strand, within RS_RS23205at 1593.824 kb on + strand, within RS_RS23205at 1593.825 kb on - strand, within RS_RS23205

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days
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1,590,487 + -0.4
1,590,488 - +0.4
1,590,820 + RS_RS23195 0.34 -0.2
1,590,821 - RS_RS23195 0.34 +0.1
1,590,821 - RS_RS23195 0.34 +0.4
1,590,821 - RS_RS23195 0.34 +0.4
1,590,979 + RS_RS23195 0.52 +0.3
1,590,988 + RS_RS23195 0.53 -0.4
1,590,988 + RS_RS23195 0.53 +0.4
1,590,989 - RS_RS23195 0.53 +0.0
1,590,989 - RS_RS23195 0.53 +0.3
1,591,028 - RS_RS23195 0.57 +0.8
1,591,105 + RS_RS23195 0.66 +0.2
1,591,106 - RS_RS23195 0.66 -0.4
1,591,408 + -1.5
1,591,408 + -0.8
1,591,409 - +0.2
1,591,409 - -0.4
1,591,409 - -0.5
1,591,924 - RS_RS23200 0.33 -0.7
1,592,433 + RS_RS23200 0.67 +0.3
1,592,433 + RS_RS23200 0.67 -0.8
1,592,433 + RS_RS23200 0.67 +0.5
1,592,433 + RS_RS23200 0.67 +0.0
1,592,433 + RS_RS23200 0.67 +0.2
1,592,434 - RS_RS23200 0.67 -0.3
1,592,434 - RS_RS23200 0.67 -0.1
1,592,499 + RS_RS23200 0.71 +0.1
1,592,499 + RS_RS23200 0.71 +0.5
1,592,500 - RS_RS23200 0.71 +0.8
1,592,718 + RS_RS23200 0.85 -0.4
1,592,719 - RS_RS23200 0.86 -0.5
1,592,719 - RS_RS23200 0.86 -0.0
1,592,719 - RS_RS23200 0.86 -0.1
1,592,719 - RS_RS23200 0.86 +1.1
1,592,719 - RS_RS23200 0.86 +0.3
1,592,751 + RS_RS23200 0.88 +1.2
1,592,752 - RS_RS23200 0.88 -0.5
1,592,752 - RS_RS23200 0.88 -0.0
1,593,043 + -0.1
1,593,044 - +0.3
1,593,044 - -0.6
1,593,044 - +0.6
1,593,044 - -0.1
1,593,044 - +0.5
1,593,044 - -0.8
1,593,372 - RS_RS23205 0.32 -0.6
1,593,372 - RS_RS23205 0.32 +0.1
1,593,372 - RS_RS23205 0.32 +1.2
1,593,605 + RS_RS23205 0.56 +0.4
1,593,824 + RS_RS23205 0.79 +0.7
1,593,825 - RS_RS23205 0.79 -0.2

Or see this region's nucleotide sequence