Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06260

Experiment: water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06255 and RS_RS06260 are separated by 131 nucleotidesRS_RS06260 and RS_RS06265 are separated by 31 nucleotides RS_RS06255: RS_RS06255 - gfo/Idh/MocA family oxidoreductase, at 1,323,318 to 1,324,490 _RS06255 RS_RS06260: RS_RS06260 - MurR/RpiR family transcriptional regulator, at 1,324,622 to 1,325,500 _RS06260 RS_RS06265: RS_RS06265 - amino-acid N-acetyltransferase, at 1,325,532 to 1,326,929 _RS06265 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -2 -1 0 1 2at 1323.741 kb on + strand, within RS_RS06255at 1323.742 kb on - strand, within RS_RS06255at 1323.918 kb on + strand, within RS_RS06255at 1323.919 kb on - strand, within RS_RS06255at 1323.919 kb on - strand, within RS_RS06255at 1323.951 kb on + strand, within RS_RS06255at 1324.066 kb on - strand, within RS_RS06255at 1324.198 kb on - strand, within RS_RS06255at 1324.326 kb on + strand, within RS_RS06255at 1324.327 kb on - strand, within RS_RS06255at 1324.327 kb on - strand, within RS_RS06255at 1324.329 kb on + strand, within RS_RS06255at 1324.482 kb on + strandat 1324.483 kb on - strandat 1324.529 kb on - strandat 1324.529 kb on - strandat 1324.686 kb on - strandat 1325.445 kb on - strandat 1325.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days
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1,323,741 + RS_RS06255 0.36 +2.0
1,323,742 - RS_RS06255 0.36 +1.1
1,323,918 + RS_RS06255 0.51 -1.1
1,323,919 - RS_RS06255 0.51 +0.7
1,323,919 - RS_RS06255 0.51 -0.9
1,323,951 + RS_RS06255 0.54 +0.7
1,324,066 - RS_RS06255 0.64 -0.0
1,324,198 - RS_RS06255 0.75 -0.3
1,324,326 + RS_RS06255 0.86 -0.3
1,324,327 - RS_RS06255 0.86 -1.8
1,324,327 - RS_RS06255 0.86 -0.2
1,324,329 + RS_RS06255 0.86 -0.2
1,324,482 + +0.2
1,324,483 - -0.4
1,324,529 - -2.5
1,324,529 - +0.4
1,324,686 - +2.7
1,325,445 - +1.6
1,325,534 - +0.5

Or see this region's nucleotide sequence