Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05225

Experiment: water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05220 and RS_RS25410 are separated by 107 nucleotidesRS_RS25410 and RS_RS05225 are separated by 61 nucleotidesRS_RS05225 and RS_RS05230 are separated by 109 nucleotidesRS_RS05230 and RS_RS05235 are separated by 11 nucleotides RS_RS05220: RS_RS05220 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 1,106,980 to 1,108,212 _RS05220 RS_RS25410: RS_RS25410 - hypothetical protein, at 1,108,320 to 1,108,760 _RS25410 RS_RS05225: RS_RS05225 - RNA polymerase sigma factor RpoE, at 1,108,822 to 1,109,421 _RS05225 RS_RS05230: RS_RS05230 - anti-sigma factor, at 1,109,531 to 1,110,163 _RS05230 RS_RS05235: RS_RS05235 - sugar dehydratase, at 1,110,175 to 1,111,272 _RS05235 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -1 0 1at 1108.907 kb on - strand, within RS_RS05225at 1109.035 kb on + strand, within RS_RS05225at 1109.037 kb on + strand, within RS_RS05225at 1109.077 kb on + strand, within RS_RS05225at 1109.176 kb on - strand, within RS_RS05225at 1109.266 kb on - strand, within RS_RS05225at 1109.675 kb on + strand, within RS_RS05230

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days
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1,108,907 - RS_RS05225 0.14 -0.7
1,109,035 + RS_RS05225 0.35 +0.7
1,109,037 + RS_RS05225 0.36 +0.5
1,109,077 + RS_RS05225 0.42 -0.9
1,109,176 - RS_RS05225 0.59 -0.3
1,109,266 - RS_RS05225 0.74 -0.4
1,109,675 + RS_RS05230 0.23 +0.7

Or see this region's nucleotide sequence