Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02660

Experiment: water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02655 and RS_RS02660 are separated by 110 nucleotidesRS_RS02660 and RS_RS02665 are separated by 201 nucleotides RS_RS02655: RS_RS02655 - NAD(P)/FAD-dependent oxidoreductase, at 571,524 to 572,525 _RS02655 RS_RS02660: RS_RS02660 - hypothetical protein, at 572,636 to 573,234 _RS02660 RS_RS02665: RS_RS02665 - DUF1571 domain-containing protein, at 573,436 to 574,332 _RS02665 Position (kb) 572 573 574Strain fitness (log2 ratio) -1 0 1 2at 571.906 kb on + strand, within RS_RS02655at 571.907 kb on - strand, within RS_RS02655at 571.907 kb on - strand, within RS_RS02655at 571.961 kb on - strand, within RS_RS02655at 572.478 kb on + strandat 572.646 kb on + strandat 572.646 kb on + strandat 572.646 kb on + strandat 572.647 kb on - strandat 572.763 kb on + strand, within RS_RS02660at 572.764 kb on - strand, within RS_RS02660at 572.764 kb on - strand, within RS_RS02660at 572.806 kb on - strand, within RS_RS02660at 573.098 kb on + strand, within RS_RS02660at 573.263 kb on + strandat 573.263 kb on + strandat 573.263 kb on + strandat 573.263 kb on + strandat 573.264 kb on - strandat 573.411 kb on + strandat 573.411 kb on + strandat 573.584 kb on + strand, within RS_RS02665at 573.585 kb on - strand, within RS_RS02665at 573.585 kb on - strand, within RS_RS02665at 573.741 kb on + strand, within RS_RS02665at 573.742 kb on - strand, within RS_RS02665at 574.032 kb on - strand, within RS_RS02665at 574.037 kb on + strand, within RS_RS02665

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days
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571,906 + RS_RS02655 0.38 -0.2
571,907 - RS_RS02655 0.38 -0.4
571,907 - RS_RS02655 0.38 +0.7
571,961 - RS_RS02655 0.44 +0.1
572,478 + +0.5
572,646 + +0.2
572,646 + -0.2
572,646 + -0.2
572,647 - -0.1
572,763 + RS_RS02660 0.21 -0.7
572,764 - RS_RS02660 0.21 +0.7
572,764 - RS_RS02660 0.21 +1.4
572,806 - RS_RS02660 0.28 +0.9
573,098 + RS_RS02660 0.77 -0.7
573,263 + +0.5
573,263 + -0.5
573,263 + +0.2
573,263 + +0.5
573,264 - +0.6
573,411 + -0.1
573,411 + +0.2
573,584 + RS_RS02665 0.16 +1.3
573,585 - RS_RS02665 0.17 -0.7
573,585 - RS_RS02665 0.17 -0.3
573,741 + RS_RS02665 0.34 +0.4
573,742 - RS_RS02665 0.34 +2.5
574,032 - RS_RS02665 0.66 -0.1
574,037 + RS_RS02665 0.67 -0.3

Or see this region's nucleotide sequence