Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23340

Experiment: water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23335 and RS_RS23340 are separated by 56 nucleotidesRS_RS23340 and RS_RS23345 are separated by 50 nucleotides RS_RS23335: RS_RS23335 - phosphoenolpyruvate--protein phosphotransferase, at 1,628,105 to 1,630,657 _RS23335 RS_RS23340: RS_RS23340 - maltoporin, at 1,630,714 to 1,631,958 _RS23340 RS_RS23345: RS_RS23345 - fructosidase, at 1,632,009 to 1,633,430 _RS23345 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -1 0 1 2at 1630.021 kb on - strand, within RS_RS23335at 1630.169 kb on + strand, within RS_RS23335at 1630.411 kb on + strandat 1630.657 kb on + strandat 1630.657 kb on + strandat 1630.658 kb on - strandat 1630.658 kb on - strandat 1630.658 kb on - strandat 1630.742 kb on + strandat 1630.743 kb on - strandat 1630.835 kb on + strandat 1630.835 kb on + strandat 1630.898 kb on + strand, within RS_RS23340at 1630.898 kb on + strand, within RS_RS23340at 1630.898 kb on + strand, within RS_RS23340at 1630.974 kb on - strand, within RS_RS23340at 1630.974 kb on - strand, within RS_RS23340at 1630.988 kb on + strand, within RS_RS23340at 1630.989 kb on - strand, within RS_RS23340at 1631.058 kb on - strand, within RS_RS23340at 1631.177 kb on + strand, within RS_RS23340at 1631.178 kb on - strand, within RS_RS23340at 1631.178 kb on - strand, within RS_RS23340at 1631.243 kb on + strand, within RS_RS23340at 1631.243 kb on + strand, within RS_RS23340at 1631.244 kb on - strand, within RS_RS23340at 1631.244 kb on - strand, within RS_RS23340at 1631.345 kb on + strand, within RS_RS23340at 1631.346 kb on - strand, within RS_RS23340at 1631.346 kb on - strand, within RS_RS23340at 1631.501 kb on + strand, within RS_RS23340at 1631.501 kb on + strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.543 kb on + strand, within RS_RS23340at 1631.544 kb on - strand, within RS_RS23340at 1631.603 kb on + strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.669 kb on + strand, within RS_RS23340at 1631.669 kb on + strand, within RS_RS23340at 1631.669 kb on + strand, within RS_RS23340at 1631.669 kb on + strand, within RS_RS23340at 1631.669 kb on + strand, within RS_RS23340at 1631.670 kb on - strand, within RS_RS23340at 1631.745 kb on - strand, within RS_RS23340at 1631.745 kb on - strand, within RS_RS23340at 1631.745 kb on - strand, within RS_RS23340at 1631.745 kb on - strand, within RS_RS23340at 1631.748 kb on + strand, within RS_RS23340at 1631.748 kb on + strand, within RS_RS23340at 1631.748 kb on + strand, within RS_RS23340at 1631.749 kb on - strand, within RS_RS23340at 1631.799 kb on - strand, within RS_RS23340at 1632.204 kb on + strand, within RS_RS23345at 1632.204 kb on + strand, within RS_RS23345at 1632.205 kb on - strand, within RS_RS23345at 1632.640 kb on + strand, within RS_RS23345at 1632.641 kb on - strand, within RS_RS23345at 1632.722 kb on - strand, within RS_RS23345at 1632.829 kb on + strand, within RS_RS23345at 1632.829 kb on + strand, within RS_RS23345at 1632.829 kb on + strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.830 kb on - strand, within RS_RS23345at 1632.835 kb on + strand, within RS_RS23345at 1632.835 kb on + strand, within RS_RS23345at 1632.835 kb on + strand, within RS_RS23345at 1632.836 kb on - strand, within RS_RS23345at 1632.836 kb on - strand, within RS_RS23345at 1632.836 kb on - strand, within RS_RS23345at 1632.836 kb on - strand, within RS_RS23345

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days
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1,630,021 - RS_RS23335 0.75 +0.6
1,630,169 + RS_RS23335 0.81 +1.1
1,630,411 + -1.2
1,630,657 + -0.7
1,630,657 + +0.4
1,630,658 - +0.3
1,630,658 - +0.3
1,630,658 - -1.7
1,630,742 + -0.5
1,630,743 - -1.5
1,630,835 + -0.1
1,630,835 + +1.2
1,630,898 + RS_RS23340 0.15 -0.0
1,630,898 + RS_RS23340 0.15 +0.3
1,630,898 + RS_RS23340 0.15 -0.1
1,630,974 - RS_RS23340 0.21 +0.3
1,630,974 - RS_RS23340 0.21 +0.6
1,630,988 + RS_RS23340 0.22 -0.1
1,630,989 - RS_RS23340 0.22 -0.2
1,631,058 - RS_RS23340 0.28 -0.1
1,631,177 + RS_RS23340 0.37 +0.6
1,631,178 - RS_RS23340 0.37 +0.3
1,631,178 - RS_RS23340 0.37 +0.2
1,631,243 + RS_RS23340 0.42 +0.4
1,631,243 + RS_RS23340 0.42 +0.7
1,631,244 - RS_RS23340 0.43 +0.0
1,631,244 - RS_RS23340 0.43 +1.3
1,631,345 + RS_RS23340 0.51 -0.1
1,631,346 - RS_RS23340 0.51 -0.4
1,631,346 - RS_RS23340 0.51 +0.8
1,631,501 + RS_RS23340 0.63 +0.6
1,631,501 + RS_RS23340 0.63 +1.4
1,631,502 - RS_RS23340 0.63 -0.0
1,631,502 - RS_RS23340 0.63 +0.3
1,631,502 - RS_RS23340 0.63 -1.2
1,631,543 + RS_RS23340 0.67 +0.4
1,631,544 - RS_RS23340 0.67 +0.8
1,631,603 + RS_RS23340 0.71 +0.1
1,631,604 - RS_RS23340 0.71 -0.7
1,631,604 - RS_RS23340 0.71 -0.2
1,631,604 - RS_RS23340 0.71 +0.5
1,631,604 - RS_RS23340 0.71 -0.2
1,631,621 + RS_RS23340 0.73 -1.5
1,631,621 + RS_RS23340 0.73 -0.0
1,631,621 + RS_RS23340 0.73 -0.2
1,631,621 + RS_RS23340 0.73 -0.0
1,631,622 - RS_RS23340 0.73 -0.5
1,631,622 - RS_RS23340 0.73 -1.5
1,631,622 - RS_RS23340 0.73 -0.2
1,631,622 - RS_RS23340 0.73 -0.4
1,631,622 - RS_RS23340 0.73 -0.5
1,631,622 - RS_RS23340 0.73 +1.1
1,631,622 - RS_RS23340 0.73 +0.0
1,631,669 + RS_RS23340 0.77 +0.1
1,631,669 + RS_RS23340 0.77 -0.3
1,631,669 + RS_RS23340 0.77 +0.2
1,631,669 + RS_RS23340 0.77 +0.2
1,631,669 + RS_RS23340 0.77 -0.7
1,631,670 - RS_RS23340 0.77 +0.7
1,631,745 - RS_RS23340 0.83 -0.3
1,631,745 - RS_RS23340 0.83 +0.3
1,631,745 - RS_RS23340 0.83 +0.6
1,631,745 - RS_RS23340 0.83 +0.7
1,631,748 + RS_RS23340 0.83 -0.4
1,631,748 + RS_RS23340 0.83 +0.3
1,631,748 + RS_RS23340 0.83 -0.6
1,631,749 - RS_RS23340 0.83 +1.1
1,631,799 - RS_RS23340 0.87 +0.3
1,632,204 + RS_RS23345 0.14 -0.9
1,632,204 + RS_RS23345 0.14 +0.2
1,632,205 - RS_RS23345 0.14 -0.1
1,632,640 + RS_RS23345 0.44 +1.1
1,632,641 - RS_RS23345 0.44 -0.1
1,632,722 - RS_RS23345 0.50 -0.3
1,632,829 + RS_RS23345 0.58 -0.7
1,632,829 + RS_RS23345 0.58 +0.2
1,632,829 + RS_RS23345 0.58 -0.1
1,632,830 - RS_RS23345 0.58 +0.1
1,632,830 - RS_RS23345 0.58 -0.2
1,632,830 - RS_RS23345 0.58 -0.4
1,632,830 - RS_RS23345 0.58 +0.3
1,632,830 - RS_RS23345 0.58 -0.0
1,632,830 - RS_RS23345 0.58 +0.5
1,632,835 + RS_RS23345 0.58 -1.2
1,632,835 + RS_RS23345 0.58 -0.4
1,632,835 + RS_RS23345 0.58 +0.5
1,632,836 - RS_RS23345 0.58 -0.2
1,632,836 - RS_RS23345 0.58 +0.3
1,632,836 - RS_RS23345 0.58 +2.0
1,632,836 - RS_RS23345 0.58 -0.4

Or see this region's nucleotide sequence