Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23335

Experiment: water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23330 and RS_RS23335 are separated by 606 nucleotidesRS_RS23335 and RS_RS23340 are separated by 56 nucleotides RS_RS23330: RS_RS23330 - type III effector protein, at 1,622,270 to 1,627,498 _RS23330 RS_RS23335: RS_RS23335 - phosphoenolpyruvate--protein phosphotransferase, at 1,628,105 to 1,630,657 _RS23335 RS_RS23340: RS_RS23340 - maltoporin, at 1,630,714 to 1,631,958 _RS23340 Position (kb) 1628 1629 1630 1631Strain fitness (log2 ratio) -1 0 1at 1627.378 kb on + strandat 1627.379 kb on - strandat 1627.436 kb on + strandat 1627.436 kb on + strandat 1627.437 kb on - strandat 1627.478 kb on + strandat 1627.478 kb on + strandat 1627.479 kb on - strandat 1627.605 kb on + strandat 1627.718 kb on - strandat 1627.854 kb on + strandat 1628.436 kb on + strand, within RS_RS23335at 1628.437 kb on - strand, within RS_RS23335at 1628.437 kb on - strand, within RS_RS23335at 1628.437 kb on - strand, within RS_RS23335at 1628.761 kb on - strand, within RS_RS23335at 1629.249 kb on - strand, within RS_RS23335at 1629.589 kb on + strand, within RS_RS23335at 1630.021 kb on - strand, within RS_RS23335at 1630.169 kb on + strand, within RS_RS23335at 1630.411 kb on + strandat 1630.657 kb on + strandat 1630.657 kb on + strandat 1630.658 kb on - strandat 1630.658 kb on - strandat 1630.658 kb on - strandat 1630.742 kb on + strandat 1630.743 kb on - strandat 1630.835 kb on + strandat 1630.835 kb on + strandat 1630.898 kb on + strand, within RS_RS23340at 1630.898 kb on + strand, within RS_RS23340at 1630.898 kb on + strand, within RS_RS23340at 1630.974 kb on - strand, within RS_RS23340at 1630.974 kb on - strand, within RS_RS23340at 1630.988 kb on + strand, within RS_RS23340at 1630.989 kb on - strand, within RS_RS23340at 1631.058 kb on - strand, within RS_RS23340at 1631.177 kb on + strand, within RS_RS23340at 1631.178 kb on - strand, within RS_RS23340at 1631.178 kb on - strand, within RS_RS23340at 1631.243 kb on + strand, within RS_RS23340at 1631.243 kb on + strand, within RS_RS23340at 1631.244 kb on - strand, within RS_RS23340at 1631.244 kb on - strand, within RS_RS23340at 1631.345 kb on + strand, within RS_RS23340at 1631.346 kb on - strand, within RS_RS23340at 1631.346 kb on - strand, within RS_RS23340at 1631.501 kb on + strand, within RS_RS23340at 1631.501 kb on + strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.502 kb on - strand, within RS_RS23340at 1631.543 kb on + strand, within RS_RS23340at 1631.544 kb on - strand, within RS_RS23340at 1631.603 kb on + strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.604 kb on - strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.621 kb on + strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340at 1631.622 kb on - strand, within RS_RS23340

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days
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1,627,378 + +0.4
1,627,379 - -0.9
1,627,436 + -0.1
1,627,436 + -0.2
1,627,437 - -0.9
1,627,478 + -0.7
1,627,478 + -0.5
1,627,479 - +0.8
1,627,605 + -0.4
1,627,718 - -0.3
1,627,854 + -0.8
1,628,436 + RS_RS23335 0.13 -0.4
1,628,437 - RS_RS23335 0.13 -0.6
1,628,437 - RS_RS23335 0.13 +0.1
1,628,437 - RS_RS23335 0.13 -0.4
1,628,761 - RS_RS23335 0.26 -0.4
1,629,249 - RS_RS23335 0.45 -0.5
1,629,589 + RS_RS23335 0.58 +0.0
1,630,021 - RS_RS23335 0.75 +0.6
1,630,169 + RS_RS23335 0.81 +1.1
1,630,411 + -1.2
1,630,657 + -0.7
1,630,657 + +0.4
1,630,658 - +0.3
1,630,658 - +0.3
1,630,658 - -1.7
1,630,742 + -0.5
1,630,743 - -1.5
1,630,835 + -0.1
1,630,835 + +1.2
1,630,898 + RS_RS23340 0.15 -0.0
1,630,898 + RS_RS23340 0.15 +0.3
1,630,898 + RS_RS23340 0.15 -0.1
1,630,974 - RS_RS23340 0.21 +0.3
1,630,974 - RS_RS23340 0.21 +0.6
1,630,988 + RS_RS23340 0.22 -0.1
1,630,989 - RS_RS23340 0.22 -0.2
1,631,058 - RS_RS23340 0.28 -0.1
1,631,177 + RS_RS23340 0.37 +0.6
1,631,178 - RS_RS23340 0.37 +0.3
1,631,178 - RS_RS23340 0.37 +0.2
1,631,243 + RS_RS23340 0.42 +0.4
1,631,243 + RS_RS23340 0.42 +0.7
1,631,244 - RS_RS23340 0.43 +0.0
1,631,244 - RS_RS23340 0.43 +1.3
1,631,345 + RS_RS23340 0.51 -0.1
1,631,346 - RS_RS23340 0.51 -0.4
1,631,346 - RS_RS23340 0.51 +0.8
1,631,501 + RS_RS23340 0.63 +0.6
1,631,501 + RS_RS23340 0.63 +1.4
1,631,502 - RS_RS23340 0.63 -0.0
1,631,502 - RS_RS23340 0.63 +0.3
1,631,502 - RS_RS23340 0.63 -1.2
1,631,543 + RS_RS23340 0.67 +0.4
1,631,544 - RS_RS23340 0.67 +0.8
1,631,603 + RS_RS23340 0.71 +0.1
1,631,604 - RS_RS23340 0.71 -0.7
1,631,604 - RS_RS23340 0.71 -0.2
1,631,604 - RS_RS23340 0.71 +0.5
1,631,604 - RS_RS23340 0.71 -0.2
1,631,621 + RS_RS23340 0.73 -1.5
1,631,621 + RS_RS23340 0.73 -0.0
1,631,621 + RS_RS23340 0.73 -0.2
1,631,621 + RS_RS23340 0.73 -0.0
1,631,622 - RS_RS23340 0.73 -0.5
1,631,622 - RS_RS23340 0.73 -1.5
1,631,622 - RS_RS23340 0.73 -0.2
1,631,622 - RS_RS23340 0.73 -0.4
1,631,622 - RS_RS23340 0.73 -0.5
1,631,622 - RS_RS23340 0.73 +1.1
1,631,622 - RS_RS23340 0.73 +0.0

Or see this region's nucleotide sequence