Experiment: water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05975 and RS_RS05980 are separated by 109 nucleotides RS_RS05980 and RS_RS05985 are separated by 22 nucleotides RS_RS05985 and RS_RS05990 are separated by 78 nucleotides
RS_RS05975: RS_RS05975 - YbaB/EbfC family nucleoid-associated protein, at 1,262,060 to 1,262,407
_RS05975
RS_RS05980: RS_RS05980 - recombination protein RecR, at 1,262,517 to 1,263,137
_RS05980
RS_RS05985: RS_RS05985 - carbohydrate porin, at 1,263,160 to 1,264,665
_RS05985
RS_RS05990: RS_RS05990 - GntR family transcriptional regulator, at 1,264,744 to 1,265,664
_RS05990
Position (kb) 1263
1264
1265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1262.616 kb on + strand, within RS_RS05980 at 1263.004 kb on - strand, within RS_RS05980 at 1263.084 kb on + strand at 1263.085 kb on - strand at 1263.218 kb on + strand at 1263.219 kb on - strand at 1263.236 kb on + strand at 1263.236 kb on + strand at 1263.237 kb on - strand at 1263.243 kb on - strand at 1263.243 kb on - strand at 1263.243 kb on - strand at 1263.284 kb on + strand at 1263.285 kb on - strand at 1263.285 kb on - strand at 1263.288 kb on - strand at 1263.314 kb on + strand, within RS_RS05985 at 1263.315 kb on - strand, within RS_RS05985 at 1263.315 kb on - strand, within RS_RS05985 at 1263.761 kb on + strand, within RS_RS05985 at 1263.762 kb on - strand, within RS_RS05985 at 1263.771 kb on - strand, within RS_RS05985 at 1263.873 kb on + strand, within RS_RS05985 at 1263.873 kb on + strand, within RS_RS05985 at 1263.874 kb on - strand, within RS_RS05985 at 1263.874 kb on - strand, within RS_RS05985 at 1263.960 kb on - strand, within RS_RS05985 at 1264.124 kb on + strand, within RS_RS05985 at 1264.149 kb on - strand, within RS_RS05985 at 1264.149 kb on - strand, within RS_RS05985 at 1264.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days remove 1,262,616 + RS_RS05980 0.16 -2.0 1,263,004 - RS_RS05980 0.78 +1.9 1,263,084 + -0.5 1,263,085 - -0.6 1,263,218 + -0.1 1,263,219 - -2.5 1,263,236 + +0.3 1,263,236 + -0.5 1,263,237 - -1.1 1,263,243 - -0.1 1,263,243 - -0.2 1,263,243 - +0.7 1,263,284 + +0.6 1,263,285 - -0.3 1,263,285 - +0.5 1,263,288 - -0.5 1,263,314 + RS_RS05985 0.10 -0.4 1,263,315 - RS_RS05985 0.10 -0.6 1,263,315 - RS_RS05985 0.10 +0.1 1,263,761 + RS_RS05985 0.40 +1.0 1,263,762 - RS_RS05985 0.40 -0.1 1,263,771 - RS_RS05985 0.41 -0.8 1,263,873 + RS_RS05985 0.47 +0.5 1,263,873 + RS_RS05985 0.47 -0.8 1,263,874 - RS_RS05985 0.47 -0.4 1,263,874 - RS_RS05985 0.47 -0.5 1,263,960 - RS_RS05985 0.53 +0.6 1,264,124 + RS_RS05985 0.64 +0.1 1,264,149 - RS_RS05985 0.66 -0.3 1,264,149 - RS_RS05985 0.66 -0.3 1,264,608 - +0.2
Or see this region's nucleotide sequence