Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS26160 and RS_RS19930 are separated by 50 nucleotides RS_RS19930 and RS_RS26165 are separated by 204 nucleotides RS_RS26165 and RS_RS19935 are separated by 255 nucleotides
RS_RS26160: RS_RS26160 - hypothetical protein, at 722,201 to 722,533
_RS26160
RS_RS19930: RS_RS19930 - DUF2147 domain-containing protein, at 722,584 to 723,054
_RS19930
RS_RS26165: RS_RS26165 - hypothetical protein, at 723,259 to 723,366
_RS26165
RS_RS19935: RS_RS19935 - oxidoreductase, at 723,622 to 724,452
_RS19935
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.652 kb on + strand at 721.652 kb on + strand at 721.652 kb on + strand at 721.652 kb on + strand at 721.652 kb on + strand at 721.652 kb on + strand at 721.653 kb on - strand at 721.653 kb on - strand at 721.653 kb on - strand at 721.653 kb on - strand at 721.719 kb on + strand at 721.719 kb on + strand at 721.719 kb on + strand at 721.719 kb on + strand at 721.719 kb on + strand at 721.719 kb on + strand at 721.720 kb on - strand at 721.720 kb on - strand at 721.721 kb on + strand at 721.721 kb on + strand at 721.721 kb on + strand at 721.721 kb on + strand at 721.721 kb on + strand at 721.722 kb on - strand at 721.722 kb on - strand at 721.722 kb on - strand at 721.722 kb on - strand at 721.722 kb on - strand at 721.804 kb on + strand at 722.018 kb on + strand at 722.018 kb on + strand at 722.018 kb on + strand at 722.019 kb on - strand at 722.019 kb on - strand at 722.022 kb on + strand at 722.022 kb on + strand at 722.022 kb on + strand at 722.023 kb on - strand at 722.023 kb on - strand at 722.023 kb on - strand at 722.088 kb on + strand at 722.202 kb on + strand at 722.203 kb on - strand at 722.269 kb on + strand, within RS_RS26160 at 722.270 kb on - strand, within RS_RS26160 at 722.270 kb on - strand, within RS_RS26160 at 722.305 kb on + strand, within RS_RS26160 at 722.306 kb on - strand, within RS_RS26160 at 722.335 kb on + strand, within RS_RS26160 at 722.335 kb on + strand, within RS_RS26160 at 722.336 kb on - strand, within RS_RS26160 at 722.336 kb on - strand, within RS_RS26160 at 722.336 kb on - strand, within RS_RS26160 at 722.413 kb on + strand, within RS_RS26160 at 722.413 kb on + strand, within RS_RS26160 at 722.414 kb on - strand, within RS_RS26160 at 722.486 kb on - strand, within RS_RS26160 at 722.525 kb on + strand at 722.605 kb on + strand at 722.605 kb on + strand at 722.606 kb on - strand at 722.620 kb on + strand at 722.687 kb on + strand, within RS_RS19930 at 722.687 kb on + strand, within RS_RS19930 at 722.687 kb on + strand, within RS_RS19930 at 722.687 kb on + strand, within RS_RS19930 at 722.687 kb on + strand, within RS_RS19930 at 722.688 kb on - strand, within RS_RS19930 at 722.688 kb on - strand, within RS_RS19930 at 722.688 kb on - strand, within RS_RS19930 at 722.688 kb on - strand, within RS_RS19930 at 722.711 kb on + strand, within RS_RS19930 at 722.711 kb on + strand, within RS_RS19930 at 722.712 kb on - strand, within RS_RS19930 at 722.861 kb on + strand, within RS_RS19930 at 722.861 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.897 kb on + strand, within RS_RS19930 at 722.898 kb on - strand, within RS_RS19930 at 722.898 kb on - strand, within RS_RS19930 at 722.898 kb on - strand, within RS_RS19930 at 722.898 kb on - strand, within RS_RS19930 at 722.980 kb on + strand, within RS_RS19930 at 722.981 kb on - strand, within RS_RS19930 at 722.981 kb on - strand, within RS_RS19930 at 723.000 kb on + strand, within RS_RS19930 at 723.000 kb on + strand, within RS_RS19930 at 723.034 kb on + strand at 723.035 kb on - strand at 723.035 kb on - strand at 723.035 kb on - strand at 723.035 kb on - strand at 723.035 kb on - strand at 723.035 kb on - strand at 723.037 kb on + strand at 723.038 kb on - strand at 723.070 kb on + strand at 723.071 kb on - strand at 723.088 kb on - strand at 723.088 kb on - strand at 723.129 kb on + strand at 723.129 kb on + strand at 723.129 kb on + strand at 723.129 kb on + strand at 723.129 kb on + strand at 723.216 kb on + strand at 723.216 kb on + strand at 723.217 kb on - strand at 723.305 kb on + strand, within RS_RS26165 at 723.306 kb on - strand, within RS_RS26165 at 723.367 kb on + strand at 723.367 kb on + strand at 723.368 kb on - strand at 723.368 kb on - strand at 723.368 kb on - strand at 723.368 kb on - strand at 723.368 kb on - strand at 723.461 kb on + strand at 723.461 kb on + strand at 723.468 kb on + strand at 723.520 kb on + strand at 723.520 kb on + strand at 723.520 kb on + strand at 723.520 kb on + strand at 723.520 kb on + strand at 723.520 kb on + strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.521 kb on - strand at 723.585 kb on + strand at 723.586 kb on - strand at 723.586 kb on - strand at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.721 kb on + strand, within RS_RS19935 at 723.722 kb on - strand, within RS_RS19935 at 723.722 kb on - strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.776 kb on + strand, within RS_RS19935 at 723.845 kb on + strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.846 kb on - strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.889 kb on + strand, within RS_RS19935 at 723.890 kb on - strand, within RS_RS19935 at 723.890 kb on - strand, within RS_RS19935 at 723.929 kb on - strand, within RS_RS19935 at 723.929 kb on - strand, within RS_RS19935 at 724.045 kb on + strand, within RS_RS19935 at 724.046 kb on - strand, within RS_RS19935
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 721,652 + -0.3 721,652 + +1.1 721,652 + -1.3 721,652 + +0.4 721,652 + +0.2 721,652 + -0.9 721,653 - +0.3 721,653 - -2.0 721,653 - -0.5 721,653 - -0.6 721,719 + -1.5 721,719 + -0.1 721,719 + +0.2 721,719 + +0.6 721,719 + -0.1 721,719 + -0.2 721,720 - -0.1 721,720 - +1.4 721,721 + -1.5 721,721 + -0.3 721,721 + +0.6 721,721 + -0.5 721,721 + +0.2 721,722 - +0.0 721,722 - -1.5 721,722 - -0.5 721,722 - +0.7 721,722 - +2.1 721,804 + -0.1 722,018 + +1.1 722,018 + +0.3 722,018 + +0.5 722,019 - -0.5 722,019 - +1.3 722,022 + -0.5 722,022 + -0.9 722,022 + +0.5 722,023 - +0.1 722,023 - -0.9 722,023 - -0.2 722,088 + -0.2 722,202 + -1.3 722,203 - -0.1 722,269 + RS_RS26160 0.20 -0.8 722,270 - RS_RS26160 0.21 +0.5 722,270 - RS_RS26160 0.21 -1.3 722,305 + RS_RS26160 0.31 -0.7 722,306 - RS_RS26160 0.32 -0.2 722,335 + RS_RS26160 0.40 -0.7 722,335 + RS_RS26160 0.40 -0.7 722,336 - RS_RS26160 0.41 +0.4 722,336 - RS_RS26160 0.41 -0.6 722,336 - RS_RS26160 0.41 +0.6 722,413 + RS_RS26160 0.64 -0.3 722,413 + RS_RS26160 0.64 +1.1 722,414 - RS_RS26160 0.64 -1.1 722,486 - RS_RS26160 0.86 -0.1 722,525 + +0.5 722,605 + +0.9 722,605 + -0.4 722,606 - -0.3 722,620 + -0.5 722,687 + RS_RS19930 0.22 -0.4 722,687 + RS_RS19930 0.22 -0.1 722,687 + RS_RS19930 0.22 +0.3 722,687 + RS_RS19930 0.22 -0.0 722,687 + RS_RS19930 0.22 +0.9 722,688 - RS_RS19930 0.22 +2.6 722,688 - RS_RS19930 0.22 -0.5 722,688 - RS_RS19930 0.22 -0.3 722,688 - RS_RS19930 0.22 +0.3 722,711 + RS_RS19930 0.27 -0.5 722,711 + RS_RS19930 0.27 +0.5 722,712 - RS_RS19930 0.27 +0.3 722,861 + RS_RS19930 0.59 +0.3 722,861 + RS_RS19930 0.59 +0.7 722,897 + RS_RS19930 0.66 +0.1 722,897 + RS_RS19930 0.66 -0.5 722,897 + RS_RS19930 0.66 -0.5 722,897 + RS_RS19930 0.66 +0.3 722,897 + RS_RS19930 0.66 +0.5 722,897 + RS_RS19930 0.66 +1.6 722,897 + RS_RS19930 0.66 +0.0 722,898 - RS_RS19930 0.67 -0.9 722,898 - RS_RS19930 0.67 -0.5 722,898 - RS_RS19930 0.67 +0.0 722,898 - RS_RS19930 0.67 +0.1 722,980 + RS_RS19930 0.84 -1.2 722,981 - RS_RS19930 0.84 -0.4 722,981 - RS_RS19930 0.84 -0.0 723,000 + RS_RS19930 0.88 -0.2 723,000 + RS_RS19930 0.88 +0.6 723,034 + +0.7 723,035 - -1.0 723,035 - -0.4 723,035 - -0.9 723,035 - -0.4 723,035 - -0.8 723,035 - +0.0 723,037 + +0.1 723,038 - -1.1 723,070 + -0.2 723,071 - +0.7 723,088 - +1.1 723,088 - -1.2 723,129 + +1.1 723,129 + -0.2 723,129 + -0.5 723,129 + -0.0 723,129 + -0.6 723,216 + +0.1 723,216 + -0.3 723,217 - -0.3 723,305 + RS_RS26165 0.43 -0.5 723,306 - RS_RS26165 0.44 -0.7 723,367 + -0.1 723,367 + -0.3 723,368 - -0.6 723,368 - +0.4 723,368 - +0.3 723,368 - -1.4 723,368 - -0.1 723,461 + -0.6 723,461 + +0.2 723,468 + +1.1 723,520 + +0.1 723,520 + +1.3 723,520 + +0.5 723,520 + +0.3 723,520 + +0.2 723,520 + +0.1 723,521 - +0.5 723,521 - +0.1 723,521 - -0.3 723,521 - +1.1 723,521 - +0.3 723,521 - -0.1 723,521 - +0.3 723,585 + -0.3 723,586 - +0.0 723,586 - +0.5 723,721 + RS_RS19935 0.12 -0.5 723,721 + RS_RS19935 0.12 -0.9 723,721 + RS_RS19935 0.12 -1.4 723,721 + RS_RS19935 0.12 -0.1 723,721 + RS_RS19935 0.12 +0.3 723,721 + RS_RS19935 0.12 +0.2 723,722 - RS_RS19935 0.12 +1.1 723,722 - RS_RS19935 0.12 -0.0 723,776 + RS_RS19935 0.19 +0.5 723,776 + RS_RS19935 0.19 -0.5 723,776 + RS_RS19935 0.19 +0.4 723,776 + RS_RS19935 0.19 +0.5 723,845 + RS_RS19935 0.27 +0.1 723,846 - RS_RS19935 0.27 -0.4 723,846 - RS_RS19935 0.27 -0.1 723,846 - RS_RS19935 0.27 +1.0 723,889 + RS_RS19935 0.32 -0.5 723,889 + RS_RS19935 0.32 -0.4 723,889 + RS_RS19935 0.32 +0.4 723,889 + RS_RS19935 0.32 -0.1 723,889 + RS_RS19935 0.32 +0.1 723,889 + RS_RS19935 0.32 -0.2 723,889 + RS_RS19935 0.32 -1.1 723,890 - RS_RS19935 0.32 -0.3 723,890 - RS_RS19935 0.32 +1.1 723,929 - RS_RS19935 0.37 -0.8 723,929 - RS_RS19935 0.37 +0.3 724,045 + RS_RS19935 0.51 -0.6 724,046 - RS_RS19935 0.51 -0.7
Or see this region's nucleotide sequence