Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18620

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18610 and RS_RS18615 are separated by 121 nucleotidesRS_RS18615 and RS_RS18620 are separated by 160 nucleotidesRS_RS18620 and RS_RS18625 are separated by 193 nucleotides RS_RS18610: RS_RS18610 - 3-oxoacyl-ACP reductase FabG, at 400,310 to 401,077 _RS18610 RS_RS18615: RS_RS18615 - hypothetical protein, at 401,199 to 401,774 _RS18615 RS_RS18620: RS_RS18620 - DUF561 domain-containing protein, at 401,935 to 403,023 _RS18620 RS_RS18625: RS_RS18625 - LysR family transcriptional regulator, at 403,217 to 404,134 _RS18625 Position (kb) 401 402 403 404Strain fitness (log2 ratio) -1 0 1 2at 400.942 kb on - strand, within RS_RS18610at 401.105 kb on - strandat 401.143 kb on - strandat 401.296 kb on + strand, within RS_RS18615at 401.894 kb on + strandat 401.895 kb on - strandat 401.898 kb on - strandat 402.083 kb on + strand, within RS_RS18620at 402.083 kb on + strand, within RS_RS18620at 402.084 kb on - strand, within RS_RS18620at 402.223 kb on + strand, within RS_RS18620at 402.224 kb on - strand, within RS_RS18620at 402.226 kb on + strand, within RS_RS18620at 402.226 kb on + strand, within RS_RS18620at 402.667 kb on + strand, within RS_RS18620at 402.667 kb on + strand, within RS_RS18620at 402.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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400,942 - RS_RS18610 0.82 -0.5
401,105 - +0.5
401,143 - -0.2
401,296 + RS_RS18615 0.17 +0.5
401,894 + -0.1
401,895 - +0.0
401,898 - +0.8
402,083 + RS_RS18620 0.14 -0.5
402,083 + RS_RS18620 0.14 -0.3
402,084 - RS_RS18620 0.14 +2.6
402,223 + RS_RS18620 0.26 +0.3
402,224 - RS_RS18620 0.27 -0.1
402,226 + RS_RS18620 0.27 +0.0
402,226 + RS_RS18620 0.27 -0.2
402,667 + RS_RS18620 0.67 -0.7
402,667 + RS_RS18620 0.67 -0.1
402,973 - +1.5

Or see this region's nucleotide sequence