Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS14805 and RS_RS14810 are separated by 56 nucleotides RS_RS14810 and RS_RS14815 overlap by 4 nucleotides RS_RS14815 and RS_RS14820 are separated by 234 nucleotides RS_RS14820 and RS_RS14825 are separated by 66 nucleotides
RS_RS14805: RS_RS14805 - BolA family transcriptional regulator, at 3,183,867 to 3,184,103
_RS14805
RS_RS14810: RS_RS14810 - ABC transporter permease, at 3,184,160 to 3,184,948
_RS14810
RS_RS14815: RS_RS14815 - ABC transporter ATP-binding protein, at 3,184,945 to 3,185,910
_RS14815
RS_RS14820: RS_RS14820 - STAS domain-containing protein, at 3,186,145 to 3,186,459
_RS14820
RS_RS14825: RS_RS14825 - hypothetical protein, at 3,186,526 to 3,187,161
_RS14825
Position (kb) 3184
3185
3186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3184.073 kb on - strand, within RS_RS14805 at 3184.177 kb on - strand at 3184.306 kb on - strand, within RS_RS14810 at 3184.606 kb on - strand, within RS_RS14810 at 3184.606 kb on - strand, within RS_RS14810 at 3185.604 kb on - strand, within RS_RS14815 at 3185.874 kb on - strand at 3185.921 kb on - strand at 3186.213 kb on - strand, within RS_RS14820 at 3186.671 kb on + strand, within RS_RS14825 at 3186.671 kb on + strand, within RS_RS14825 at 3186.672 kb on - strand, within RS_RS14825 at 3186.794 kb on + strand, within RS_RS14825 at 3186.836 kb on + strand, within RS_RS14825
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 3,184,073 - RS_RS14805 0.87 +0.1 3,184,177 - +0.1 3,184,306 - RS_RS14810 0.19 +0.9 3,184,606 - RS_RS14810 0.57 +0.1 3,184,606 - RS_RS14810 0.57 +0.2 3,185,604 - RS_RS14815 0.68 -0.4 3,185,874 - +0.9 3,185,921 - +0.9 3,186,213 - RS_RS14820 0.22 -3.0 3,186,671 + RS_RS14825 0.23 -4.1 3,186,671 + RS_RS14825 0.23 -3.3 3,186,672 - RS_RS14825 0.23 -3.4 3,186,794 + RS_RS14825 0.42 -3.8 3,186,836 + RS_RS14825 0.49 -3.3
Or see this region's nucleotide sequence