Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14665

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS14655 and RS_RS14660 are separated by 58 nucleotidesRS_RS14660 and RS_RS14665 are separated by 147 nucleotidesRS_RS14665 and RS_RS14670 are separated by 26 nucleotides RS_RS14655: RS_RS14655 - ClpXP protease specificity-enhancing factor, at 3,156,399 to 3,156,896 _RS14655 RS_RS14660: RS_RS14660 - transcription modulator protein, at 3,156,955 to 3,157,566 _RS14660 RS_RS14665: RS_RS14665 - cytochrome c, at 3,157,714 to 3,158,460 _RS14665 RS_RS14670: RS_RS14670 - cytochrome b, at 3,158,487 to 3,159,890 _RS14670 Position (kb) 3157 3158 3159Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3156.794 kb on + strand, within RS_RS14655at 3156.853 kb on + strandat 3157.845 kb on - strand, within RS_RS14665at 3158.085 kb on - strand, within RS_RS14665at 3158.085 kb on - strand, within RS_RS14665at 3158.090 kb on + strand, within RS_RS14665at 3158.472 kb on + strandat 3158.971 kb on + strand, within RS_RS14670at 3159.043 kb on + strand, within RS_RS14670at 3159.128 kb on - strand, within RS_RS14670at 3159.128 kb on - strand, within RS_RS14670at 3159.409 kb on + strand, within RS_RS14670at 3159.410 kb on - strand, within RS_RS14670at 3159.436 kb on + strand, within RS_RS14670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
remove
3,156,794 + RS_RS14655 0.79 +1.8
3,156,853 + +0.3
3,157,845 - RS_RS14665 0.18 -2.5
3,158,085 - RS_RS14665 0.50 -0.7
3,158,085 - RS_RS14665 0.50 -6.6
3,158,090 + RS_RS14665 0.50 -3.0
3,158,472 + +0.9
3,158,971 + RS_RS14670 0.34 +0.9
3,159,043 + RS_RS14670 0.40 -4.8
3,159,128 - RS_RS14670 0.46 -3.9
3,159,128 - RS_RS14670 0.46 -6.3
3,159,409 + RS_RS14670 0.66 -3.4
3,159,410 - RS_RS14670 0.66 -4.1
3,159,436 + RS_RS14670 0.68 +0.9

Or see this region's nucleotide sequence