Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04045 and RS_RS04050 are separated by 82 nucleotides RS_RS04050 and RS_RS04055 are separated by 12 nucleotides RS_RS04055 and RS_RS04060 are separated by 52 nucleotides
RS_RS04045: RS_RS04045 - MFS transporter, at 852,756 to 853,976
_RS04045
RS_RS04050: RS_RS04050 - class II aldolase, at 854,059 to 854,844
_RS04050
RS_RS04055: RS_RS04055 - tautomerase, at 854,857 to 855,045
_RS04055
RS_RS04060: RS_RS04060 - low specificity L-threonine aldolase, at 855,098 to 856,135
_RS04060
Position (kb) 854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 853.470 kb on + strand, within RS_RS04045 at 853.642 kb on - strand, within RS_RS04045 at 853.821 kb on + strand, within RS_RS04045 at 854.024 kb on - strand at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.189 kb on - strand, within RS_RS04050 at 854.427 kb on + strand, within RS_RS04050 at 854.818 kb on - strand at 855.122 kb on + strand at 855.123 kb on - strand at 855.123 kb on - strand at 855.123 kb on - strand at 855.153 kb on - strand at 855.153 kb on - strand at 855.153 kb on - strand at 855.323 kb on + strand, within RS_RS04060 at 855.323 kb on + strand, within RS_RS04060 at 855.323 kb on + strand, within RS_RS04060 at 855.324 kb on - strand, within RS_RS04060 at 855.324 kb on - strand, within RS_RS04060 at 855.324 kb on - strand, within RS_RS04060 at 855.542 kb on + strand, within RS_RS04060 at 855.543 kb on - strand, within RS_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 853,470 + RS_RS04045 0.58 -0.6 853,642 - RS_RS04045 0.73 +0.2 853,821 + RS_RS04045 0.87 -0.4 854,024 - -0.1 854,188 + RS_RS04050 0.16 -0.1 854,188 + RS_RS04050 0.16 -0.4 854,188 + RS_RS04050 0.16 +1.0 854,188 + RS_RS04050 0.16 -0.6 854,188 + RS_RS04050 0.16 -2.0 854,188 + RS_RS04050 0.16 +0.5 854,189 - RS_RS04050 0.17 -0.5 854,427 + RS_RS04050 0.47 -0.1 854,818 - +0.8 855,122 + -1.2 855,123 - +0.2 855,123 - -0.1 855,123 - -0.2 855,153 - -0.6 855,153 - -0.3 855,153 - -0.6 855,323 + RS_RS04060 0.22 -0.5 855,323 + RS_RS04060 0.22 -0.0 855,323 + RS_RS04060 0.22 -1.0 855,324 - RS_RS04060 0.22 -0.1 855,324 - RS_RS04060 0.22 -0.0 855,324 - RS_RS04060 0.22 -0.0 855,542 + RS_RS04060 0.43 -0.3 855,543 - RS_RS04060 0.43 -1.6
Or see this region's nucleotide sequence