Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02630

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02625 and RS_RS02630 are separated by 79 nucleotidesRS_RS02630 and RS_RS02635 are separated by 185 nucleotidesRS_RS02635 and RS_RS02640 are separated by 2 nucleotides RS_RS02625: RS_RS02625 - apolipoprotein N-acyltransferase, at 565,208 to 566,719 _RS02625 RS_RS02630: RS_RS02630 - HlyC/CorC family transporter, at 566,799 to 567,695 _RS02630 RS_RS02635: RS_RS02635 - rRNA maturation RNase YbeY, at 567,881 to 568,648 _RS02635 RS_RS02640: RS_RS02640 - PhoH family protein, at 568,651 to 569,628 _RS02640 Position (kb) 566 567 568Strain fitness (log2 ratio) -1 0 1 2at 567.121 kb on + strand, within RS_RS02630at 567.194 kb on - strand, within RS_RS02630at 567.326 kb on - strand, within RS_RS02630at 567.714 kb on + strandat 567.715 kb on - strandat 567.715 kb on - strandat 567.732 kb on - strandat 567.732 kb on - strandat 568.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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567,121 + RS_RS02630 0.36 -0.5
567,194 - RS_RS02630 0.44 +1.9
567,326 - RS_RS02630 0.59 +0.9
567,714 + +1.9
567,715 - +1.2
567,715 - -0.1
567,732 - -0.1
567,732 - -0.7
568,686 - -0.7

Or see this region's nucleotide sequence