Experiment: No vitamins, second passage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_899 and HP15_900 are separated by 12 nucleotides HP15_900 and HP15_901 are separated by 66 nucleotides HP15_901 and HP15_902 are separated by 209 nucleotides HP15_902 and HP15_903 are separated by 86 nucleotides
HP15_899: HP15_899 - protein YeeN, at 912,753 to 913,478
_899
HP15_900: HP15_900 - hypothetical protein, at 913,491 to 913,652
_900
HP15_901: HP15_901 - TPR repeat, SEL1 subfamily protein-like protein, at 913,719 to 914,300
_901
HP15_902: HP15_902 - hypothetical protein, at 914,510 to 914,926
_902
HP15_903: HP15_903 - beta-lactamase domain protein, at 915,013 to 915,867
_903
Position (kb) 913
914
915 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.088 kb on - strand, within HP15_899 at 913.102 kb on + strand, within HP15_899 at 913.161 kb on + strand, within HP15_899 at 913.223 kb on - strand, within HP15_899 at 913.261 kb on + strand, within HP15_899 at 913.269 kb on - strand, within HP15_899 at 913.312 kb on + strand, within HP15_899 at 913.348 kb on - strand, within HP15_899 at 913.350 kb on + strand, within HP15_899 at 913.406 kb on - strand at 913.416 kb on - strand at 913.558 kb on + strand, within HP15_900 at 913.627 kb on - strand, within HP15_900 at 913.660 kb on + strand at 913.815 kb on - strand, within HP15_901 at 913.900 kb on - strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 914.053 kb on - strand, within HP15_901 at 914.215 kb on + strand, within HP15_901 at 914.241 kb on + strand, within HP15_901 at 914.383 kb on + strand at 914.407 kb on - strand at 914.419 kb on - strand at 914.424 kb on - strand at 914.533 kb on - strand at 914.549 kb on + strand at 914.562 kb on - strand, within HP15_902 at 914.571 kb on + strand, within HP15_902 at 914.592 kb on + strand, within HP15_902 at 914.829 kb on - strand, within HP15_902 at 914.958 kb on + strand at 914.994 kb on - strand at 914.994 kb on - strand at 915.000 kb on + strand at 915.104 kb on + strand, within HP15_903 at 915.203 kb on - strand, within HP15_903 at 915.248 kb on - strand, within HP15_903
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins, second passage remove 913,088 - HP15_899 0.46 -0.2 913,102 + HP15_899 0.48 +0.8 913,161 + HP15_899 0.56 +1.5 913,223 - HP15_899 0.65 +0.2 913,261 + HP15_899 0.70 +0.7 913,269 - HP15_899 0.71 +1.0 913,312 + HP15_899 0.77 -0.4 913,348 - HP15_899 0.82 +0.6 913,350 + HP15_899 0.82 +1.9 913,406 - +1.4 913,416 - +1.0 913,558 + HP15_900 0.41 -0.6 913,627 - HP15_900 0.84 +0.0 913,660 + -0.5 913,815 - HP15_901 0.16 -0.5 913,900 - HP15_901 0.31 +0.6 913,933 + HP15_901 0.37 -2.0 913,933 + HP15_901 0.37 -0.5 914,053 - HP15_901 0.57 -0.8 914,215 + HP15_901 0.85 -0.4 914,241 + HP15_901 0.90 -0.8 914,383 + +1.7 914,407 - -0.5 914,419 - +1.2 914,424 - -2.3 914,533 - -0.6 914,549 + +1.3 914,562 - HP15_902 0.12 -1.5 914,571 + HP15_902 0.15 +1.0 914,592 + HP15_902 0.20 +1.0 914,829 - HP15_902 0.76 -0.1 914,958 + -0.6 914,994 - +0.5 914,994 - +0.3 915,000 + +0.9 915,104 + HP15_903 0.11 +0.8 915,203 - HP15_903 0.22 +1.0 915,248 - HP15_903 0.27 +0.7
Or see this region's nucleotide sequence