Strain Fitness in Marinobacter adhaerens HP15 around HP15_791

Experiment: No vitamins, second passage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_790 and HP15_791 are separated by 21 nucleotidesHP15_791 and HP15_792 overlap by 4 nucleotidesHP15_792 and HP15_793 are separated by 136 nucleotides HP15_790: HP15_790 - 23S rRNA 5-methyluridine methyltransferase, at 803,052 to 804,362 _790 HP15_791: HP15_791 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA, at 804,384 to 806,657 _791 HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511 _792 HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992 _793 Position (kb) 804 805 806 807Strain fitness (log2 ratio) -2 -1 0 1at 803.406 kb on - strand, within HP15_790at 803.406 kb on - strand, within HP15_790at 803.446 kb on - strand, within HP15_790at 803.460 kb on - strand, within HP15_790at 803.526 kb on - strand, within HP15_790at 803.595 kb on - strand, within HP15_790at 803.628 kb on + strand, within HP15_790at 803.647 kb on + strand, within HP15_790at 803.660 kb on + strand, within HP15_790at 803.734 kb on + strand, within HP15_790at 803.743 kb on - strand, within HP15_790at 803.743 kb on - strand, within HP15_790at 803.855 kb on - strand, within HP15_790at 803.877 kb on + strand, within HP15_790at 803.906 kb on + strand, within HP15_790at 803.936 kb on + strand, within HP15_790at 803.936 kb on + strand, within HP15_790at 804.007 kb on - strand, within HP15_790at 804.084 kb on - strand, within HP15_790at 804.102 kb on + strand, within HP15_790at 804.102 kb on + strand, within HP15_790at 804.102 kb on + strand, within HP15_790at 804.110 kb on - strand, within HP15_790at 804.253 kb on + strandat 804.261 kb on - strandat 804.271 kb on + strandat 804.291 kb on + strandat 804.326 kb on - strandat 804.381 kb on + strandat 804.467 kb on - strandat 804.525 kb on - strandat 804.640 kb on - strand, within HP15_791at 804.989 kb on + strand, within HP15_791at 805.005 kb on + strand, within HP15_791at 805.024 kb on + strand, within HP15_791at 805.210 kb on - strand, within HP15_791at 805.210 kb on - strand, within HP15_791at 805.210 kb on - strand, within HP15_791at 805.228 kb on - strand, within HP15_791at 805.271 kb on + strand, within HP15_791at 805.303 kb on + strand, within HP15_791at 805.343 kb on - strand, within HP15_791at 805.363 kb on + strand, within HP15_791at 805.363 kb on + strand, within HP15_791at 805.421 kb on + strand, within HP15_791at 805.433 kb on + strand, within HP15_791at 805.436 kb on - strand, within HP15_791at 805.445 kb on + strand, within HP15_791at 805.451 kb on + strand, within HP15_791at 805.453 kb on - strand, within HP15_791at 805.459 kb on - strand, within HP15_791at 805.461 kb on + strand, within HP15_791at 805.538 kb on - strand, within HP15_791at 805.608 kb on + strand, within HP15_791at 805.752 kb on + strand, within HP15_791at 805.808 kb on - strand, within HP15_791at 805.813 kb on - strand, within HP15_791at 805.944 kb on - strand, within HP15_791at 806.005 kb on + strand, within HP15_791at 806.028 kb on - strand, within HP15_791at 806.107 kb on - strand, within HP15_791at 806.172 kb on - strand, within HP15_791at 806.237 kb on + strand, within HP15_791at 806.245 kb on - strand, within HP15_791at 806.268 kb on + strand, within HP15_791at 806.281 kb on - strand, within HP15_791at 806.316 kb on - strand, within HP15_791at 806.357 kb on + strand, within HP15_791at 806.376 kb on - strand, within HP15_791at 806.400 kb on + strand, within HP15_791at 806.462 kb on + strandat 806.470 kb on - strandat 806.586 kb on - strandat 806.650 kb on - strandat 806.664 kb on - strandat 806.665 kb on - strandat 806.726 kb on - strandat 806.726 kb on - strandat 806.771 kb on - strand, within HP15_792at 806.781 kb on - strand, within HP15_792at 807.042 kb on - strand, within HP15_792at 807.042 kb on - strand, within HP15_792at 807.176 kb on - strand, within HP15_792at 807.226 kb on + strand, within HP15_792at 807.234 kb on - strand, within HP15_792at 807.337 kb on + strand, within HP15_792at 807.350 kb on - strand, within HP15_792at 807.475 kb on + strandat 807.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
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803,406 - HP15_790 0.27 +0.3
803,406 - HP15_790 0.27 -0.5
803,446 - HP15_790 0.30 +0.0
803,460 - HP15_790 0.31 -0.9
803,526 - HP15_790 0.36 -0.5
803,595 - HP15_790 0.41 -1.5
803,628 + HP15_790 0.44 +1.0
803,647 + HP15_790 0.45 +0.7
803,660 + HP15_790 0.46 -0.2
803,734 + HP15_790 0.52 -0.3
803,743 - HP15_790 0.53 -1.3
803,743 - HP15_790 0.53 -0.6
803,855 - HP15_790 0.61 -1.6
803,877 + HP15_790 0.63 +0.9
803,906 + HP15_790 0.65 -1.5
803,936 + HP15_790 0.67 -0.7
803,936 + HP15_790 0.67 +0.2
804,007 - HP15_790 0.73 -0.5
804,084 - HP15_790 0.79 -1.9
804,102 + HP15_790 0.80 -1.8
804,102 + HP15_790 0.80 +0.5
804,102 + HP15_790 0.80 +0.0
804,110 - HP15_790 0.81 -0.6
804,253 + +0.1
804,261 - -1.3
804,271 + -0.7
804,291 + -0.1
804,326 - +1.2
804,381 + +0.6
804,467 - -1.1
804,525 - -2.0
804,640 - HP15_791 0.11 -2.2
804,989 + HP15_791 0.27 -0.2
805,005 + HP15_791 0.27 -2.2
805,024 + HP15_791 0.28 -0.3
805,210 - HP15_791 0.36 -1.6
805,210 - HP15_791 0.36 +0.2
805,210 - HP15_791 0.36 -1.1
805,228 - HP15_791 0.37 -1.0
805,271 + HP15_791 0.39 -0.6
805,303 + HP15_791 0.40 -2.0
805,343 - HP15_791 0.42 +1.0
805,363 + HP15_791 0.43 -1.7
805,363 + HP15_791 0.43 -1.7
805,421 + HP15_791 0.46 -2.3
805,433 + HP15_791 0.46 -2.1
805,436 - HP15_791 0.46 -1.7
805,445 + HP15_791 0.47 -1.2
805,451 + HP15_791 0.47 -1.0
805,453 - HP15_791 0.47 -2.7
805,459 - HP15_791 0.47 -1.5
805,461 + HP15_791 0.47 -1.1
805,538 - HP15_791 0.51 -0.7
805,608 + HP15_791 0.54 -1.0
805,752 + HP15_791 0.60 -1.9
805,808 - HP15_791 0.63 -1.0
805,813 - HP15_791 0.63 -1.0
805,944 - HP15_791 0.69 -2.2
806,005 + HP15_791 0.71 -1.3
806,028 - HP15_791 0.72 -2.0
806,107 - HP15_791 0.76 -1.7
806,172 - HP15_791 0.79 +0.7
806,237 + HP15_791 0.81 -0.8
806,245 - HP15_791 0.82 -1.6
806,268 + HP15_791 0.83 -1.2
806,281 - HP15_791 0.83 -1.3
806,316 - HP15_791 0.85 -0.3
806,357 + HP15_791 0.87 -1.7
806,376 - HP15_791 0.88 +1.0
806,400 + HP15_791 0.89 -1.5
806,462 + +0.7
806,470 - -0.7
806,586 - -0.4
806,650 - -1.4
806,664 - +0.2
806,665 - -0.9
806,726 - -0.1
806,726 - -0.6
806,771 - HP15_792 0.14 +0.7
806,781 - HP15_792 0.15 -0.2
807,042 - HP15_792 0.45 -1.1
807,042 - HP15_792 0.45 +0.8
807,176 - HP15_792 0.61 -0.2
807,226 + HP15_792 0.67 -0.4
807,234 - HP15_792 0.68 -0.9
807,337 + HP15_792 0.80 -1.7
807,350 - HP15_792 0.81 +1.0
807,475 + -0.7
807,510 + +1.0

Or see this region's nucleotide sequence