Experiment: No vitamins, second passage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_790 and HP15_791 are separated by 21 nucleotides HP15_791 and HP15_792 overlap by 4 nucleotides HP15_792 and HP15_793 are separated by 136 nucleotides
HP15_790: HP15_790 - 23S rRNA 5-methyluridine methyltransferase, at 803,052 to 804,362
_790
HP15_791: HP15_791 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA, at 804,384 to 806,657
_791
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
Position (kb)
804
805
806
807 Strain fitness (log2 ratio)
-2
-1
0
1 at 803.406 kb on - strand, within HP15_790 at 803.406 kb on - strand, within HP15_790 at 803.446 kb on - strand, within HP15_790 at 803.460 kb on - strand, within HP15_790 at 803.526 kb on - strand, within HP15_790 at 803.595 kb on - strand, within HP15_790 at 803.628 kb on + strand, within HP15_790 at 803.647 kb on + strand, within HP15_790 at 803.660 kb on + strand, within HP15_790 at 803.734 kb on + strand, within HP15_790 at 803.743 kb on - strand, within HP15_790 at 803.743 kb on - strand, within HP15_790 at 803.855 kb on - strand, within HP15_790 at 803.877 kb on + strand, within HP15_790 at 803.906 kb on + strand, within HP15_790 at 803.936 kb on + strand, within HP15_790 at 803.936 kb on + strand, within HP15_790 at 804.007 kb on - strand, within HP15_790 at 804.084 kb on - strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.110 kb on - strand, within HP15_790 at 804.253 kb on + strand at 804.261 kb on - strand at 804.271 kb on + strand at 804.291 kb on + strand at 804.326 kb on - strand at 804.381 kb on + strand at 804.467 kb on - strand at 804.525 kb on - strand at 804.640 kb on - strand, within HP15_791 at 804.989 kb on + strand, within HP15_791 at 805.005 kb on + strand, within HP15_791 at 805.024 kb on + strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.228 kb on - strand, within HP15_791 at 805.271 kb on + strand, within HP15_791 at 805.303 kb on + strand, within HP15_791 at 805.343 kb on - strand, within HP15_791 at 805.363 kb on + strand, within HP15_791 at 805.363 kb on + strand, within HP15_791 at 805.421 kb on + strand, within HP15_791 at 805.433 kb on + strand, within HP15_791 at 805.436 kb on - strand, within HP15_791 at 805.445 kb on + strand, within HP15_791 at 805.451 kb on + strand, within HP15_791 at 805.453 kb on - strand, within HP15_791 at 805.459 kb on - strand, within HP15_791 at 805.461 kb on + strand, within HP15_791 at 805.538 kb on - strand, within HP15_791 at 805.608 kb on + strand, within HP15_791 at 805.752 kb on + strand, within HP15_791 at 805.808 kb on - strand, within HP15_791 at 805.813 kb on - strand, within HP15_791 at 805.944 kb on - strand, within HP15_791 at 806.005 kb on + strand, within HP15_791 at 806.028 kb on - strand, within HP15_791 at 806.107 kb on - strand, within HP15_791 at 806.172 kb on - strand, within HP15_791 at 806.237 kb on + strand, within HP15_791 at 806.245 kb on - strand, within HP15_791 at 806.268 kb on + strand, within HP15_791 at 806.281 kb on - strand, within HP15_791 at 806.316 kb on - strand, within HP15_791 at 806.357 kb on + strand, within HP15_791 at 806.376 kb on - strand, within HP15_791 at 806.400 kb on + strand, within HP15_791 at 806.462 kb on + strand at 806.470 kb on - strand at 806.586 kb on - strand at 806.650 kb on - strand at 806.664 kb on - strand at 806.665 kb on - strand at 806.726 kb on - strand at 806.726 kb on - strand at 806.771 kb on - strand, within HP15_792 at 806.781 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.176 kb on - strand, within HP15_792 at 807.226 kb on + strand, within HP15_792 at 807.234 kb on - strand, within HP15_792 at 807.337 kb on + strand, within HP15_792 at 807.350 kb on - strand, within HP15_792 at 807.475 kb on + strand at 807.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins, second passage remove 803,406 - HP15_790 0.27 +0.3 803,406 - HP15_790 0.27 -0.5 803,446 - HP15_790 0.30 +0.0 803,460 - HP15_790 0.31 -0.9 803,526 - HP15_790 0.36 -0.5 803,595 - HP15_790 0.41 -1.5 803,628 + HP15_790 0.44 +1.0 803,647 + HP15_790 0.45 +0.7 803,660 + HP15_790 0.46 -0.2 803,734 + HP15_790 0.52 -0.3 803,743 - HP15_790 0.53 -1.3 803,743 - HP15_790 0.53 -0.6 803,855 - HP15_790 0.61 -1.6 803,877 + HP15_790 0.63 +0.9 803,906 + HP15_790 0.65 -1.5 803,936 + HP15_790 0.67 -0.7 803,936 + HP15_790 0.67 +0.2 804,007 - HP15_790 0.73 -0.5 804,084 - HP15_790 0.79 -1.9 804,102 + HP15_790 0.80 -1.8 804,102 + HP15_790 0.80 +0.5 804,102 + HP15_790 0.80 +0.0 804,110 - HP15_790 0.81 -0.6 804,253 + +0.1 804,261 - -1.3 804,271 + -0.7 804,291 + -0.1 804,326 - +1.2 804,381 + +0.6 804,467 - -1.1 804,525 - -2.0 804,640 - HP15_791 0.11 -2.2 804,989 + HP15_791 0.27 -0.2 805,005 + HP15_791 0.27 -2.2 805,024 + HP15_791 0.28 -0.3 805,210 - HP15_791 0.36 -1.6 805,210 - HP15_791 0.36 +0.2 805,210 - HP15_791 0.36 -1.1 805,228 - HP15_791 0.37 -1.0 805,271 + HP15_791 0.39 -0.6 805,303 + HP15_791 0.40 -2.0 805,343 - HP15_791 0.42 +1.0 805,363 + HP15_791 0.43 -1.7 805,363 + HP15_791 0.43 -1.7 805,421 + HP15_791 0.46 -2.3 805,433 + HP15_791 0.46 -2.1 805,436 - HP15_791 0.46 -1.7 805,445 + HP15_791 0.47 -1.2 805,451 + HP15_791 0.47 -1.0 805,453 - HP15_791 0.47 -2.7 805,459 - HP15_791 0.47 -1.5 805,461 + HP15_791 0.47 -1.1 805,538 - HP15_791 0.51 -0.7 805,608 + HP15_791 0.54 -1.0 805,752 + HP15_791 0.60 -1.9 805,808 - HP15_791 0.63 -1.0 805,813 - HP15_791 0.63 -1.0 805,944 - HP15_791 0.69 -2.2 806,005 + HP15_791 0.71 -1.3 806,028 - HP15_791 0.72 -2.0 806,107 - HP15_791 0.76 -1.7 806,172 - HP15_791 0.79 +0.7 806,237 + HP15_791 0.81 -0.8 806,245 - HP15_791 0.82 -1.6 806,268 + HP15_791 0.83 -1.2 806,281 - HP15_791 0.83 -1.3 806,316 - HP15_791 0.85 -0.3 806,357 + HP15_791 0.87 -1.7 806,376 - HP15_791 0.88 +1.0 806,400 + HP15_791 0.89 -1.5 806,462 + +0.7 806,470 - -0.7 806,586 - -0.4 806,650 - -1.4 806,664 - +0.2 806,665 - -0.9 806,726 - -0.1 806,726 - -0.6 806,771 - HP15_792 0.14 +0.7 806,781 - HP15_792 0.15 -0.2 807,042 - HP15_792 0.45 -1.1 807,042 - HP15_792 0.45 +0.8 807,176 - HP15_792 0.61 -0.2 807,226 + HP15_792 0.67 -0.4 807,234 - HP15_792 0.68 -0.9 807,337 + HP15_792 0.80 -1.7 807,350 - HP15_792 0.81 +1.0 807,475 + -0.7 807,510 + +1.0
Or see this region's nucleotide sequence