Strain Fitness in Marinobacter adhaerens HP15 around HP15_57

Experiment: No vitamins, second passage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_56 and HP15_57 are separated by 32 nucleotidesHP15_57 and HP15_58 are separated by 45 nucleotidesHP15_58 and HP15_59 are separated by 91 nucleotides HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461 _56 HP15_57: HP15_57 - conserved hypothetical protein, at 62,494 to 63,393 _57 HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068 _58 HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906 _59 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1 2at 61.499 kb on - strand, within HP15_56at 61.502 kb on - strand, within HP15_56at 61.550 kb on - strand, within HP15_56at 61.561 kb on + strand, within HP15_56at 61.733 kb on - strand, within HP15_56at 61.751 kb on + strand, within HP15_56at 61.759 kb on - strand, within HP15_56at 61.852 kb on - strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.943 kb on + strand, within HP15_56at 61.951 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.956 kb on - strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.988 kb on + strand, within HP15_56at 61.998 kb on + strand, within HP15_56at 62.026 kb on - strand, within HP15_56at 62.218 kb on - strand, within HP15_56at 62.243 kb on + strand, within HP15_56at 62.250 kb on + strand, within HP15_56at 62.266 kb on + strand, within HP15_56at 62.287 kb on + strand, within HP15_56at 62.303 kb on - strand, within HP15_56at 62.346 kb on - strand, within HP15_56at 62.415 kb on - strandat 62.481 kb on + strandat 62.487 kb on - strandat 62.516 kb on - strandat 62.536 kb on - strandat 62.577 kb on - strandat 62.590 kb on - strand, within HP15_57at 62.649 kb on - strand, within HP15_57at 62.654 kb on - strand, within HP15_57at 62.656 kb on + strand, within HP15_57at 62.666 kb on + strand, within HP15_57at 62.682 kb on + strand, within HP15_57at 62.786 kb on + strand, within HP15_57at 62.799 kb on - strand, within HP15_57at 62.837 kb on + strand, within HP15_57at 62.837 kb on + strand, within HP15_57at 62.873 kb on - strand, within HP15_57at 62.888 kb on - strand, within HP15_57at 62.920 kb on - strand, within HP15_57at 63.140 kb on + strand, within HP15_57at 63.201 kb on + strand, within HP15_57at 63.313 kb on - strandat 63.343 kb on - strandat 63.461 kb on - strandat 63.479 kb on + strandat 63.505 kb on + strand, within HP15_58at 63.569 kb on - strand, within HP15_58at 63.585 kb on + strand, within HP15_58at 63.593 kb on - strand, within HP15_58at 63.595 kb on + strand, within HP15_58at 63.601 kb on - strand, within HP15_58at 63.775 kb on + strand, within HP15_58at 63.854 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.896 kb on + strand, within HP15_58at 63.896 kb on + strand, within HP15_58at 63.904 kb on - strand, within HP15_58at 63.914 kb on + strand, within HP15_58at 63.914 kb on - strand, within HP15_58at 63.933 kb on + strand, within HP15_58at 63.936 kb on - strand, within HP15_58at 63.985 kb on + strand, within HP15_58at 63.992 kb on + strand, within HP15_58at 63.993 kb on - strand, within HP15_58at 63.997 kb on + strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.005 kb on - strand, within HP15_58at 64.031 kb on - strandat 64.063 kb on + strandat 64.066 kb on - strandat 64.066 kb on - strandat 64.067 kb on + strandat 64.071 kb on - strandat 64.139 kb on + strandat 64.141 kb on + strandat 64.141 kb on + strandat 64.142 kb on - strandat 64.149 kb on - strandat 64.196 kb on + strandat 64.229 kb on - strandat 64.229 kb on - strandat 64.274 kb on + strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.307 kb on + strand, within HP15_59at 64.310 kb on - strand, within HP15_59at 64.351 kb on - strand, within HP15_59

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
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61,499 - HP15_56 0.14 +0.2
61,502 - HP15_56 0.15 +1.1
61,550 - HP15_56 0.19 +0.3
61,561 + HP15_56 0.20 +1.1
61,733 - HP15_56 0.35 -0.8
61,751 + HP15_56 0.37 +0.4
61,759 - HP15_56 0.38 -0.1
61,852 - HP15_56 0.46 -0.4
61,943 + HP15_56 0.54 +0.0
61,943 + HP15_56 0.54 +1.1
61,951 - HP15_56 0.55 -0.6
61,956 - HP15_56 0.55 -0.6
61,956 - HP15_56 0.55 +2.1
61,988 + HP15_56 0.58 +0.1
61,988 + HP15_56 0.58 +1.6
61,998 + HP15_56 0.59 +1.5
62,026 - HP15_56 0.61 -0.9
62,218 - HP15_56 0.78 -1.2
62,243 + HP15_56 0.81 +1.2
62,250 + HP15_56 0.81 +0.8
62,266 + HP15_56 0.83 -1.2
62,287 + HP15_56 0.84 -0.0
62,303 - HP15_56 0.86 +1.2
62,346 - HP15_56 0.90 -0.6
62,415 - -0.2
62,481 + +0.7
62,487 - -0.3
62,516 - -1.0
62,536 - +0.5
62,577 - +0.5
62,590 - HP15_57 0.11 +1.5
62,649 - HP15_57 0.17 +1.3
62,654 - HP15_57 0.18 +0.5
62,656 + HP15_57 0.18 +1.8
62,666 + HP15_57 0.19 -0.5
62,682 + HP15_57 0.21 -0.9
62,786 + HP15_57 0.32 +1.4
62,799 - HP15_57 0.34 -0.5
62,837 + HP15_57 0.38 +0.3
62,837 + HP15_57 0.38 +0.3
62,873 - HP15_57 0.42 +0.3
62,888 - HP15_57 0.44 +0.7
62,920 - HP15_57 0.47 +2.1
63,140 + HP15_57 0.72 +0.9
63,201 + HP15_57 0.79 +0.9
63,313 - +0.4
63,343 - -0.6
63,461 - +0.7
63,479 + +0.7
63,505 + HP15_58 0.10 +1.1
63,569 - HP15_58 0.21 -0.2
63,585 + HP15_58 0.23 -0.6
63,593 - HP15_58 0.24 -1.3
63,595 + HP15_58 0.25 +0.7
63,601 - HP15_58 0.26 -0.5
63,775 + HP15_58 0.53 +0.2
63,854 - HP15_58 0.66 +1.1
63,870 - HP15_58 0.68 +0.8
63,870 - HP15_58 0.68 -0.3
63,870 - HP15_58 0.68 -0.4
63,896 + HP15_58 0.73 -0.9
63,896 + HP15_58 0.73 +0.5
63,904 - HP15_58 0.74 +0.2
63,914 + HP15_58 0.75 +0.3
63,914 - HP15_58 0.75 -0.5
63,933 + HP15_58 0.78 +0.8
63,936 - HP15_58 0.79 +0.4
63,985 + HP15_58 0.87 -0.0
63,992 + HP15_58 0.88 +0.2
63,993 - HP15_58 0.88 -0.7
63,997 + HP15_58 0.89 -0.8
64,000 - HP15_58 0.89 -1.0
64,000 - HP15_58 0.89 +0.1
64,005 - HP15_58 0.90 -0.6
64,031 - +1.5
64,063 + -0.1
64,066 - -0.9
64,066 - +0.5
64,067 + -0.1
64,071 - -0.6
64,139 + -0.7
64,141 + -0.3
64,141 + -0.5
64,142 - -0.7
64,149 - -0.2
64,196 + +0.3
64,229 - -0.6
64,229 - -1.0
64,274 + HP15_59 0.15 +0.0
64,282 - HP15_59 0.16 +0.6
64,282 - HP15_59 0.16 -0.1
64,282 - HP15_59 0.16 +0.5
64,307 + HP15_59 0.20 +0.9
64,310 - HP15_59 0.20 +0.4
64,351 - HP15_59 0.26 -0.8

Or see this region's nucleotide sequence