Experiment: No vitamins, second passage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_526 and HP15_527 are separated by 92 nucleotides HP15_527 and HP15_528 overlap by 11 nucleotides
HP15_526: HP15_526 - DNA uptake lipoprotein, at 541,471 to 542,346
_526
HP15_527: HP15_527 - pseudouridine synthase, RluA family, at 542,439 to 543,416
_527
HP15_528: HP15_528 - multi-copper polyphenol oxidoreductase, laccase, at 543,406 to 544,161
_528
Position (kb) 542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 541.450 kb on + strand at 541.488 kb on + strand at 541.496 kb on + strand at 541.534 kb on - strand at 542.369 kb on + strand at 542.374 kb on + strand at 542.377 kb on - strand at 542.377 kb on - strand at 542.382 kb on - strand at 542.433 kb on - strand at 542.612 kb on - strand, within HP15_527 at 542.612 kb on - strand, within HP15_527 at 542.617 kb on - strand, within HP15_527 at 542.617 kb on - strand, within HP15_527 at 542.622 kb on - strand, within HP15_527 at 542.849 kb on - strand, within HP15_527 at 543.202 kb on - strand, within HP15_527 at 543.365 kb on + strand at 543.373 kb on - strand at 543.512 kb on + strand, within HP15_528 at 543.512 kb on + strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.520 kb on - strand, within HP15_528 at 543.892 kb on + strand, within HP15_528 at 543.910 kb on - strand, within HP15_528 at 543.958 kb on + strand, within HP15_528 at 543.958 kb on + strand, within HP15_528 at 543.966 kb on - strand, within HP15_528 at 544.069 kb on + strand, within HP15_528 at 544.071 kb on + strand, within HP15_528 at 544.072 kb on - strand, within HP15_528 at 544.072 kb on - strand, within HP15_528 at 544.079 kb on - strand, within HP15_528 at 544.164 kb on - strand at 544.164 kb on - strand at 544.175 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.238 kb on - strand at 544.240 kb on - strand at 544.260 kb on + strand at 544.261 kb on + strand at 544.273 kb on - strand at 544.358 kb on + strand at 544.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins, second passage remove 541,450 + +0.4 541,488 + +0.9 541,496 + -0.8 541,534 - +0.1 542,369 + -1.6 542,374 + -0.1 542,377 - -2.4 542,377 - -1.5 542,382 - -0.2 542,433 - -2.0 542,612 - HP15_527 0.18 -1.9 542,612 - HP15_527 0.18 -2.2 542,617 - HP15_527 0.18 -2.9 542,617 - HP15_527 0.18 +0.5 542,622 - HP15_527 0.19 -1.5 542,849 - HP15_527 0.42 -1.9 543,202 - HP15_527 0.78 -1.6 543,365 + +1.0 543,373 - +1.1 543,512 + HP15_528 0.14 -0.3 543,512 + HP15_528 0.14 -0.5 543,520 - HP15_528 0.15 +0.9 543,520 - HP15_528 0.15 +0.1 543,520 - HP15_528 0.15 -1.1 543,520 - HP15_528 0.15 -0.3 543,892 + HP15_528 0.64 +0.4 543,910 - HP15_528 0.67 +0.1 543,958 + HP15_528 0.73 +0.3 543,958 + HP15_528 0.73 +0.5 543,966 - HP15_528 0.74 -0.8 544,069 + HP15_528 0.88 +0.7 544,071 + HP15_528 0.88 +1.3 544,072 - HP15_528 0.88 +0.8 544,072 - HP15_528 0.88 +0.7 544,079 - HP15_528 0.89 -0.1 544,164 - +1.0 544,164 - +0.7 544,175 - -0.3 544,238 - +0.8 544,238 - -0.7 544,238 - +1.1 544,238 - -1.6 544,240 - +0.2 544,260 + -0.5 544,261 + -0.1 544,273 - +1.3 544,358 + -0.8 544,366 - -0.9
Or see this region's nucleotide sequence