Strain Fitness in Marinobacter adhaerens HP15 around HP15_39

Experiment: No vitamins, second passage

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_38 and HP15_39 are separated by 235 nucleotidesHP15_39 and HP15_40 are separated by 430 nucleotidesHP15_40 and HP15_41 are separated by 156 nucleotides HP15_38: HP15_38 - fumarylacetoacetate (FAA) hydrolase, at 42,075 to 43,064 _38 HP15_39: HP15_39 - ring hydroxylating dioxygenase, alpha subunit, at 43,300 to 44,616 _39 HP15_40: HP15_40 - dioxygenase DitA oxygenase component small subunit-like protein, at 45,047 to 45,211 _40 HP15_41: HP15_41 - conserved hypothetical protein, at 45,368 to 45,718 _41 Position (kb) 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 42.314 kb on - strand, within HP15_38at 42.375 kb on + strand, within HP15_38at 42.403 kb on + strand, within HP15_38at 42.415 kb on + strand, within HP15_38at 42.426 kb on - strand, within HP15_38at 42.688 kb on + strand, within HP15_38at 42.749 kb on - strand, within HP15_38at 42.769 kb on + strand, within HP15_38at 42.840 kb on + strand, within HP15_38at 42.887 kb on + strand, within HP15_38at 42.915 kb on + strand, within HP15_38at 42.915 kb on + strand, within HP15_38at 42.923 kb on - strand, within HP15_38at 42.949 kb on + strand, within HP15_38at 42.957 kb on - strand, within HP15_38at 43.025 kb on - strandat 43.100 kb on + strandat 43.108 kb on - strandat 43.127 kb on - strandat 43.150 kb on + strandat 43.158 kb on - strandat 43.158 kb on - strandat 43.182 kb on - strandat 43.187 kb on + strandat 43.195 kb on - strandat 43.202 kb on - strandat 43.253 kb on + strandat 43.261 kb on + strandat 43.261 kb on - strandat 43.267 kb on + strandat 43.272 kb on + strandat 43.272 kb on + strandat 43.280 kb on - strandat 43.294 kb on + strandat 43.302 kb on - strandat 43.414 kb on - strandat 43.434 kb on - strand, within HP15_39at 43.434 kb on - strand, within HP15_39at 43.434 kb on - strand, within HP15_39at 43.485 kb on - strand, within HP15_39at 43.595 kb on - strand, within HP15_39at 43.595 kb on - strand, within HP15_39at 43.633 kb on - strand, within HP15_39at 43.677 kb on + strand, within HP15_39at 43.683 kb on - strand, within HP15_39at 43.683 kb on - strand, within HP15_39at 43.692 kb on - strand, within HP15_39at 43.940 kb on - strand, within HP15_39at 43.941 kb on - strand, within HP15_39at 43.946 kb on + strand, within HP15_39at 43.951 kb on + strand, within HP15_39at 43.951 kb on + strand, within HP15_39at 43.951 kb on + strand, within HP15_39at 43.954 kb on - strand, within HP15_39at 43.959 kb on - strand, within HP15_39at 43.959 kb on - strand, within HP15_39at 43.959 kb on - strand, within HP15_39at 43.959 kb on - strand, within HP15_39at 43.973 kb on + strand, within HP15_39at 43.973 kb on + strand, within HP15_39at 43.990 kb on + strand, within HP15_39at 43.990 kb on + strand, within HP15_39at 43.990 kb on + strand, within HP15_39at 43.998 kb on - strand, within HP15_39at 43.998 kb on - strand, within HP15_39at 43.998 kb on - strand, within HP15_39at 44.007 kb on + strand, within HP15_39at 44.012 kb on + strand, within HP15_39at 44.091 kb on + strand, within HP15_39at 44.152 kb on - strand, within HP15_39at 44.164 kb on + strand, within HP15_39at 44.165 kb on - strand, within HP15_39at 44.179 kb on - strand, within HP15_39at 44.214 kb on + strand, within HP15_39at 44.254 kb on - strand, within HP15_39at 44.274 kb on + strand, within HP15_39at 44.276 kb on + strand, within HP15_39at 44.282 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.377 kb on + strand, within HP15_39at 44.401 kb on - strand, within HP15_39at 44.412 kb on + strand, within HP15_39at 44.412 kb on + strand, within HP15_39at 44.420 kb on - strand, within HP15_39at 44.434 kb on + strand, within HP15_39at 44.604 kb on - strandat 44.611 kb on + strandat 44.633 kb on + strandat 44.661 kb on - strandat 44.709 kb on + strandat 44.709 kb on + strandat 44.709 kb on + strandat 44.716 kb on - strandat 44.717 kb on - strandat 44.807 kb on + strandat 44.825 kb on + strandat 44.887 kb on - strandat 44.904 kb on + strandat 44.909 kb on + strandat 44.912 kb on - strandat 45.091 kb on - strand, within HP15_40at 45.101 kb on - strand, within HP15_40at 45.142 kb on - strand, within HP15_40at 45.143 kb on - strand, within HP15_40at 45.308 kb on - strandat 45.473 kb on - strand, within HP15_41at 45.568 kb on + strand, within HP15_41at 45.577 kb on - strand, within HP15_41at 45.587 kb on - strand, within HP15_41

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
remove
42,314 - HP15_38 0.24 +4.1
42,375 + HP15_38 0.30 -0.5
42,403 + HP15_38 0.33 -0.3
42,415 + HP15_38 0.34 -0.1
42,426 - HP15_38 0.35 +1.5
42,688 + HP15_38 0.62 +0.0
42,749 - HP15_38 0.68 +0.5
42,769 + HP15_38 0.70 +1.1
42,840 + HP15_38 0.77 -0.9
42,887 + HP15_38 0.82 +0.4
42,915 + HP15_38 0.85 -0.3
42,915 + HP15_38 0.85 +2.0
42,923 - HP15_38 0.86 -1.3
42,949 + HP15_38 0.88 -0.0
42,957 - HP15_38 0.89 -0.9
43,025 - +0.6
43,100 + +0.7
43,108 - -0.4
43,127 - +0.9
43,150 + +1.0
43,158 - +0.7
43,158 - -0.2
43,182 - -0.0
43,187 + +1.5
43,195 - -0.2
43,202 - -0.5
43,253 + +0.4
43,261 + +0.4
43,261 - +1.4
43,267 + +1.4
43,272 + -0.4
43,272 + +1.9
43,280 - -1.6
43,294 + +0.4
43,302 - +1.4
43,414 - +1.1
43,434 - HP15_39 0.10 +0.0
43,434 - HP15_39 0.10 -0.1
43,434 - HP15_39 0.10 +0.0
43,485 - HP15_39 0.14 -1.2
43,595 - HP15_39 0.22 +0.9
43,595 - HP15_39 0.22 +0.8
43,633 - HP15_39 0.25 -0.0
43,677 + HP15_39 0.29 -0.0
43,683 - HP15_39 0.29 +2.1
43,683 - HP15_39 0.29 -0.9
43,692 - HP15_39 0.30 +1.8
43,940 - HP15_39 0.49 -1.1
43,941 - HP15_39 0.49 +1.0
43,946 + HP15_39 0.49 -0.2
43,951 + HP15_39 0.49 +1.0
43,951 + HP15_39 0.49 -0.2
43,951 + HP15_39 0.49 +1.5
43,954 - HP15_39 0.50 +0.4
43,959 - HP15_39 0.50 -2.0
43,959 - HP15_39 0.50 +0.7
43,959 - HP15_39 0.50 -1.0
43,959 - HP15_39 0.50 +0.9
43,973 + HP15_39 0.51 +0.7
43,973 + HP15_39 0.51 -1.6
43,990 + HP15_39 0.52 -0.7
43,990 + HP15_39 0.52 +0.8
43,990 + HP15_39 0.52 +0.6
43,998 - HP15_39 0.53 -1.1
43,998 - HP15_39 0.53 +0.1
43,998 - HP15_39 0.53 +0.7
44,007 + HP15_39 0.54 -1.8
44,012 + HP15_39 0.54 +0.5
44,091 + HP15_39 0.60 +0.7
44,152 - HP15_39 0.65 +0.4
44,164 + HP15_39 0.66 +0.6
44,165 - HP15_39 0.66 +1.1
44,179 - HP15_39 0.67 -0.6
44,214 + HP15_39 0.69 +0.9
44,254 - HP15_39 0.72 +0.2
44,274 + HP15_39 0.74 -4.1
44,276 + HP15_39 0.74 +0.8
44,282 - HP15_39 0.75 +0.3
44,284 - HP15_39 0.75 +2.1
44,284 - HP15_39 0.75 -0.9
44,284 - HP15_39 0.75 -0.9
44,284 - HP15_39 0.75 -1.5
44,377 + HP15_39 0.82 -0.1
44,401 - HP15_39 0.84 +0.7
44,412 + HP15_39 0.84 +1.1
44,412 + HP15_39 0.84 -0.5
44,420 - HP15_39 0.85 +1.0
44,434 + HP15_39 0.86 -0.2
44,604 - +0.5
44,611 + -0.5
44,633 + -0.8
44,661 - +0.5
44,709 + +0.4
44,709 + -0.4
44,709 + -0.6
44,716 - +0.5
44,717 - +0.5
44,807 + +1.3
44,825 + -1.3
44,887 - -1.0
44,904 + +0.5
44,909 + -2.0
44,912 - -0.2
45,091 - HP15_40 0.27 +1.1
45,101 - HP15_40 0.33 +1.1
45,142 - HP15_40 0.58 -1.9
45,143 - HP15_40 0.58 -0.3
45,308 - +1.1
45,473 - HP15_41 0.30 -1.6
45,568 + HP15_41 0.57 -1.6
45,577 - HP15_41 0.60 -0.3
45,587 - HP15_41 0.62 +0.4

Or see this region's nucleotide sequence