Strain Fitness in Marinobacter adhaerens HP15 around HP15_2044

Experiment: No vitamins, second passage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2042 and HP15_2043 are separated by 18 nucleotidesHP15_2043 and HP15_2044 are separated by 25 nucleotidesHP15_2044 and HP15_2045 are separated by 208 nucleotidesHP15_2045 and HP15_2046 are separated by 13 nucleotides HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560 _2042 HP15_2043: HP15_2043 - protein YebC, at 2,141,579 to 2,142,322 _2043 HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156 _2044 HP15_2045: HP15_2045 - DNA-binding transcriptional repressor FabR, at 2,144,365 to 2,144,982 _2045 HP15_2046: HP15_2046 - histidine triad (HIT) protein, at 2,144,996 to 2,145,436 _2046 Position (kb) 2142 2143 2144 2145Strain fitness (log2 ratio) -1 0 1 2at 2141.585 kb on - strandat 2141.736 kb on - strand, within HP15_2043at 2141.874 kb on - strand, within HP15_2043at 2141.903 kb on + strand, within HP15_2043at 2142.056 kb on - strand, within HP15_2043at 2142.219 kb on + strand, within HP15_2043at 2142.408 kb on - strandat 2144.569 kb on + strand, within HP15_2045at 2144.588 kb on - strand, within HP15_2045at 2144.715 kb on + strand, within HP15_2045at 2144.800 kb on + strand, within HP15_2045at 2144.910 kb on + strand, within HP15_2045at 2144.930 kb on - strandat 2144.964 kb on - strandat 2144.989 kb on - strandat 2145.099 kb on + strand, within HP15_2046at 2145.100 kb on + strand, within HP15_2046at 2145.128 kb on - strand, within HP15_2046at 2145.128 kb on - strand, within HP15_2046

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
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2,141,585 - +1.6
2,141,736 - HP15_2043 0.21 +1.8
2,141,874 - HP15_2043 0.40 +0.4
2,141,903 + HP15_2043 0.44 +0.3
2,142,056 - HP15_2043 0.64 -0.1
2,142,219 + HP15_2043 0.86 +1.0
2,142,408 - -1.3
2,144,569 + HP15_2045 0.33 -0.6
2,144,588 - HP15_2045 0.36 -1.3
2,144,715 + HP15_2045 0.57 -0.2
2,144,800 + HP15_2045 0.70 +0.9
2,144,910 + HP15_2045 0.88 +1.2
2,144,930 - +0.2
2,144,964 - +1.4
2,144,989 - -0.2
2,145,099 + HP15_2046 0.23 +1.2
2,145,100 + HP15_2046 0.24 +0.7
2,145,128 - HP15_2046 0.30 +0.7
2,145,128 - HP15_2046 0.30 +0.9

Or see this region's nucleotide sequence