Strain Fitness in Marinobacter adhaerens HP15 around HP15_1852

Experiment: No vitamins, second passage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1851 and HP15_1852 are separated by 65 nucleotidesHP15_1852 and HP15_1853 are separated by 190 nucleotidesHP15_1853 and HP15_1854 are separated by 27 nucleotides HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341 _1851 HP15_1852: HP15_1852 - homoserine kinase, at 1,951,407 to 1,952,063 _1852 HP15_1853: HP15_1853 - phosphoadenosine phosphosulfate reductase, at 1,952,254 to 1,952,976 _1853 HP15_1854: HP15_1854 - transcriptional regulator, LysR family, at 1,953,004 to 1,953,981 _1854 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1950.408 kb on - strand, within HP15_1851at 1950.439 kb on - strand, within HP15_1851at 1950.444 kb on - strand, within HP15_1851at 1950.476 kb on - strand, within HP15_1851at 1950.793 kb on + strand, within HP15_1851at 1950.796 kb on - strand, within HP15_1851at 1950.833 kb on + strand, within HP15_1851at 1951.024 kb on - strand, within HP15_1851at 1951.024 kb on - strand, within HP15_1851at 1951.062 kb on + strand, within HP15_1851at 1951.167 kb on - strand, within HP15_1851at 1951.211 kb on - strandat 1951.232 kb on + strandat 1951.343 kb on - strandat 1951.371 kb on - strandat 1951.461 kb on + strandat 1952.116 kb on - strandat 1952.213 kb on + strandat 1952.251 kb on + strandat 1952.970 kb on + strandat 1952.978 kb on - strandat 1952.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
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1,950,408 - HP15_1851 0.33 -0.6
1,950,439 - HP15_1851 0.35 -0.4
1,950,444 - HP15_1851 0.35 -0.9
1,950,476 - HP15_1851 0.38 +0.4
1,950,793 + HP15_1851 0.61 -1.5
1,950,796 - HP15_1851 0.61 -0.8
1,950,833 + HP15_1851 0.63 -0.4
1,951,024 - HP15_1851 0.77 -1.4
1,951,024 - HP15_1851 0.77 -1.9
1,951,062 + HP15_1851 0.80 -0.1
1,951,167 - HP15_1851 0.87 +0.9
1,951,211 - -0.7
1,951,232 + +0.1
1,951,343 - -0.4
1,951,371 - +0.8
1,951,461 + +0.0
1,952,116 - +0.6
1,952,213 + -5.0
1,952,251 + -1.3
1,952,970 + +2.0
1,952,978 - +0.6
1,952,978 - +0.4

Or see this region's nucleotide sequence