Strain Fitness in Marinobacter adhaerens HP15 around HP15_1618

Experiment: No vitamins, second passage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1615 and HP15_1616 are separated by 130 nucleotidesHP15_1616 and HP15_1618 are separated by 14 nucleotidesHP15_1618 and HP15_1617 are separated by 138 nucleotidesHP15_1617 and HP15_1619 overlap by 28 nucleotides HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906 _1615 HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681 _1616 HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451 _1618 HP15_1617: HP15_1617 - hypothetical protein, at 1,715,590 to 1,715,721 _1617 HP15_1619: HP15_1619 - GntR domain protein, at 1,715,694 to 1,716,371 _1619 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1713.843 kb on + strandat 1713.861 kb on - strandat 1713.945 kb on - strandat 1714.004 kb on - strandat 1714.062 kb on - strandat 1714.067 kb on - strandat 1714.210 kb on + strand, within HP15_1616at 1714.219 kb on - strand, within HP15_1616at 1714.243 kb on - strand, within HP15_1616at 1714.306 kb on + strand, within HP15_1616at 1714.306 kb on + strand, within HP15_1616at 1714.314 kb on - strand, within HP15_1616at 1714.354 kb on + strand, within HP15_1616at 1714.517 kb on - strand, within HP15_1616at 1714.529 kb on - strand, within HP15_1616at 1714.663 kb on - strandat 1714.677 kb on + strandat 1714.720 kb on - strandat 1714.749 kb on - strandat 1714.765 kb on - strandat 1714.882 kb on + strand, within HP15_1618at 1714.980 kb on + strand, within HP15_1618at 1715.325 kb on + strand, within HP15_1618at 1715.358 kb on - strand, within HP15_1618at 1715.416 kb on - strandat 1715.518 kb on + strandat 1715.535 kb on + strandat 1715.600 kb on - strandat 1715.663 kb on + strand, within HP15_1617at 1715.671 kb on - strand, within HP15_1617at 1715.700 kb on - strandat 1715.927 kb on + strand, within HP15_1619at 1715.969 kb on + strand, within HP15_1619at 1716.133 kb on - strand, within HP15_1619at 1716.246 kb on - strand, within HP15_1619at 1716.291 kb on + strand, within HP15_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins, second passage
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1,713,843 + -1.4
1,713,861 - +0.5
1,713,945 - +2.3
1,714,004 - -1.9
1,714,062 - -0.3
1,714,067 - +0.0
1,714,210 + HP15_1616 0.27 -1.4
1,714,219 - HP15_1616 0.28 -0.6
1,714,243 - HP15_1616 0.32 -0.4
1,714,306 + HP15_1616 0.42 -0.5
1,714,306 + HP15_1616 0.42 -0.8
1,714,314 - HP15_1616 0.43 -0.6
1,714,354 + HP15_1616 0.49 -1.7
1,714,517 - HP15_1616 0.74 -0.0
1,714,529 - HP15_1616 0.76 -1.4
1,714,663 - -0.1
1,714,677 + +1.4
1,714,720 - +1.3
1,714,749 - +2.0
1,714,765 - +2.3
1,714,882 + HP15_1618 0.25 +1.7
1,714,980 + HP15_1618 0.38 +1.0
1,715,325 + HP15_1618 0.83 +1.3
1,715,358 - HP15_1618 0.88 +1.3
1,715,416 - +1.5
1,715,518 + +1.0
1,715,535 + +1.6
1,715,600 - +2.7
1,715,663 + HP15_1617 0.55 +1.7
1,715,671 - HP15_1617 0.61 +2.1
1,715,700 - -0.3
1,715,927 + HP15_1619 0.34 +2.1
1,715,969 + HP15_1619 0.41 +1.3
1,716,133 - HP15_1619 0.65 -0.4
1,716,246 - HP15_1619 0.81 +2.0
1,716,291 + HP15_1619 0.88 +2.8

Or see this region's nucleotide sequence