Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18020 and ABZR87_RS18025 are separated by 498 nucleotides ABZR87_RS18025 and ABZR87_RS18030 overlap by 4 nucleotides
ABZR87_RS18020: ABZR87_RS18020 - YitT family protein, at 398,565 to 399,218
_RS18020
ABZR87_RS18025: ABZR87_RS18025 - flagellar biosynthesis protein FlhA, at 399,717 to 401,852
_RS18025
ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756
_RS18030
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.874 kb on + strand, within ABZR87_RS18020 at 398.874 kb on + strand, within ABZR87_RS18020 at 398.874 kb on + strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 399.028 kb on + strand, within ABZR87_RS18020 at 399.029 kb on - strand, within ABZR87_RS18020 at 399.133 kb on + strand, within ABZR87_RS18020 at 399.134 kb on - strand, within ABZR87_RS18020 at 399.307 kb on + strand at 399.308 kb on - strand at 399.308 kb on - strand at 399.443 kb on - strand at 399.443 kb on - strand at 399.506 kb on + strand at 399.506 kb on + strand at 399.522 kb on - strand at 399.522 kb on - strand at 399.533 kb on + strand at 399.534 kb on - strand at 399.546 kb on + strand at 399.584 kb on + strand at 399.610 kb on + strand at 399.610 kb on + strand at 399.610 kb on + strand at 399.611 kb on - strand at 400.077 kb on + strand, within ABZR87_RS18025 at 400.077 kb on + strand, within ABZR87_RS18025 at 400.077 kb on + strand, within ABZR87_RS18025 at 400.078 kb on - strand, within ABZR87_RS18025 at 400.434 kb on + strand, within ABZR87_RS18025 at 400.434 kb on + strand, within ABZR87_RS18025 at 400.434 kb on + strand, within ABZR87_RS18025 at 400.434 kb on + strand, within ABZR87_RS18025 at 400.435 kb on - strand, within ABZR87_RS18025 at 400.435 kb on - strand, within ABZR87_RS18025 at 400.435 kb on - strand, within ABZR87_RS18025 at 400.674 kb on + strand, within ABZR87_RS18025 at 400.675 kb on - strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.414 kb on + strand, within ABZR87_RS18025 at 401.415 kb on - strand, within ABZR87_RS18025 at 401.615 kb on + strand, within ABZR87_RS18025 at 401.719 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.866 kb on + strand at 401.867 kb on - strand at 402.440 kb on - strand, within ABZR87_RS18030
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 398,874 + ABZR87_RS18020 0.47 -0.3 398,874 + ABZR87_RS18020 0.47 -0.0 398,874 + ABZR87_RS18020 0.47 -0.2 398,875 - ABZR87_RS18020 0.47 -0.8 398,875 - ABZR87_RS18020 0.47 +0.3 398,875 - ABZR87_RS18020 0.47 +0.1 399,028 + ABZR87_RS18020 0.71 +0.2 399,029 - ABZR87_RS18020 0.71 -0.0 399,133 + ABZR87_RS18020 0.87 -0.5 399,134 - ABZR87_RS18020 0.87 +0.7 399,307 + +0.2 399,308 - +0.2 399,308 - +0.3 399,443 - +0.3 399,443 - -1.6 399,506 + -1.5 399,506 + -0.6 399,522 - +0.0 399,522 - -0.5 399,533 + +1.9 399,534 - -0.3 399,546 + -0.3 399,584 + +0.2 399,610 + +0.2 399,610 + +0.6 399,610 + +0.4 399,611 - +0.6 400,077 + ABZR87_RS18025 0.17 +1.0 400,077 + ABZR87_RS18025 0.17 +0.8 400,077 + ABZR87_RS18025 0.17 +0.2 400,078 - ABZR87_RS18025 0.17 -0.2 400,434 + ABZR87_RS18025 0.34 -0.5 400,434 + ABZR87_RS18025 0.34 +0.2 400,434 + ABZR87_RS18025 0.34 -0.2 400,434 + ABZR87_RS18025 0.34 +1.0 400,435 - ABZR87_RS18025 0.34 +0.2 400,435 - ABZR87_RS18025 0.34 +0.2 400,435 - ABZR87_RS18025 0.34 +0.1 400,674 + ABZR87_RS18025 0.45 +0.7 400,675 - ABZR87_RS18025 0.45 -0.5 401,199 + ABZR87_RS18025 0.69 +0.2 401,199 + ABZR87_RS18025 0.69 +0.1 401,199 + ABZR87_RS18025 0.69 +0.4 401,200 - ABZR87_RS18025 0.69 -0.0 401,200 - ABZR87_RS18025 0.69 -0.5 401,200 - ABZR87_RS18025 0.69 +0.7 401,253 + ABZR87_RS18025 0.72 -0.4 401,253 + ABZR87_RS18025 0.72 -0.6 401,254 - ABZR87_RS18025 0.72 -0.9 401,254 - ABZR87_RS18025 0.72 +0.6 401,261 + ABZR87_RS18025 0.72 +0.3 401,261 + ABZR87_RS18025 0.72 -0.1 401,261 + ABZR87_RS18025 0.72 -1.7 401,262 - ABZR87_RS18025 0.72 -0.3 401,262 - ABZR87_RS18025 0.72 +0.4 401,262 - ABZR87_RS18025 0.72 -0.0 401,414 + ABZR87_RS18025 0.79 +0.2 401,415 - ABZR87_RS18025 0.79 +0.4 401,615 + ABZR87_RS18025 0.89 -0.0 401,719 + -0.7 401,819 + -0.4 401,819 + -2.2 401,819 + +0.4 401,866 + +0.2 401,867 - -0.5 402,440 - ABZR87_RS18030 0.31 +0.2
Or see this region's nucleotide sequence