Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10045

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10040 and ABZR87_RS10045 are separated by 89 nucleotidesABZR87_RS10045 and ABZR87_RS10050 are separated by 135 nucleotides ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050 _RS10040 ABZR87_RS10045: ABZR87_RS10045 - lactate utilization protein C, at 2,133,140 to 2,133,859 _RS10045 ABZR87_RS10050: ABZR87_RS10050 - sodium:proton antiporter, at 2,133,995 to 2,135,404 _RS10050 Position (kb) 2133 2134Strain fitness (log2 ratio) -1 0 1 2at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.155 kb on - strand, within ABZR87_RS10040at 2132.460 kb on + strand, within ABZR87_RS10040at 2132.461 kb on - strand, within ABZR87_RS10040at 2132.532 kb on + strand, within ABZR87_RS10040at 2132.532 kb on + strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.533 kb on - strand, within ABZR87_RS10040at 2132.611 kb on - strand, within ABZR87_RS10040at 2132.611 kb on - strand, within ABZR87_RS10040at 2132.642 kb on + strand, within ABZR87_RS10040at 2132.643 kb on - strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.646 kb on + strand, within ABZR87_RS10040at 2132.647 kb on - strand, within ABZR87_RS10040at 2132.760 kb on + strand, within ABZR87_RS10040at 2132.760 kb on + strand, within ABZR87_RS10040at 2132.761 kb on - strand, within ABZR87_RS10040at 2132.841 kb on + strand, within ABZR87_RS10040at 2132.841 kb on + strand, within ABZR87_RS10040at 2132.842 kb on - strand, within ABZR87_RS10040at 2132.910 kb on + strand, within ABZR87_RS10040at 2132.911 kb on - strand, within ABZR87_RS10040at 2132.911 kb on - strand, within ABZR87_RS10040at 2133.012 kb on + strandat 2133.021 kb on + strandat 2133.021 kb on + strandat 2133.022 kb on - strandat 2133.022 kb on - strandat 2133.049 kb on - strandat 2133.049 kb on - strandat 2133.070 kb on - strandat 2133.115 kb on - strandat 2133.276 kb on - strand, within ABZR87_RS10045at 2133.417 kb on - strand, within ABZR87_RS10045at 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.906 kb on - strandat 2133.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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2,132,155 - ABZR87_RS10040 0.23 -0.1
2,132,155 - ABZR87_RS10040 0.23 -0.0
2,132,155 - ABZR87_RS10040 0.23 -0.0
2,132,460 + ABZR87_RS10040 0.49 +1.0
2,132,461 - ABZR87_RS10040 0.50 +0.0
2,132,532 + ABZR87_RS10040 0.56 -0.4
2,132,532 + ABZR87_RS10040 0.56 -0.5
2,132,533 - ABZR87_RS10040 0.56 -1.4
2,132,533 - ABZR87_RS10040 0.56 +0.7
2,132,533 - ABZR87_RS10040 0.56 -0.4
2,132,611 - ABZR87_RS10040 0.62 -0.2
2,132,611 - ABZR87_RS10040 0.62 -1.0
2,132,642 + ABZR87_RS10040 0.65 +0.5
2,132,643 - ABZR87_RS10040 0.65 +0.0
2,132,646 + ABZR87_RS10040 0.65 +0.7
2,132,646 + ABZR87_RS10040 0.65 +0.1
2,132,646 + ABZR87_RS10040 0.65 -0.0
2,132,647 - ABZR87_RS10040 0.65 -0.6
2,132,760 + ABZR87_RS10040 0.75 -0.1
2,132,760 + ABZR87_RS10040 0.75 +0.2
2,132,761 - ABZR87_RS10040 0.75 +0.2
2,132,841 + ABZR87_RS10040 0.82 -0.1
2,132,841 + ABZR87_RS10040 0.82 -0.8
2,132,842 - ABZR87_RS10040 0.82 +0.4
2,132,910 + ABZR87_RS10040 0.88 -0.4
2,132,911 - ABZR87_RS10040 0.88 +0.4
2,132,911 - ABZR87_RS10040 0.88 -0.6
2,133,012 + +0.5
2,133,021 + +0.1
2,133,021 + +0.2
2,133,022 - +0.1
2,133,022 - +0.5
2,133,049 - +0.6
2,133,049 - -0.2
2,133,070 - +0.5
2,133,115 - -0.3
2,133,276 - ABZR87_RS10045 0.19 +1.8
2,133,417 - ABZR87_RS10045 0.38 +1.1
2,133,906 - +0.9
2,133,906 - +1.5
2,133,906 - +0.1
2,133,906 - +1.3
2,133,930 + -0.0

Or see this region's nucleotide sequence