Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05295

Experiment: Pimelic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05290 and ABZR87_RS05295 are separated by 101 nucleotidesABZR87_RS05295 and ABZR87_RS05300 are separated by 108 nucleotides ABZR87_RS05290: ABZR87_RS05290 - class III extradiol ring-cleavage dioxygenase, at 1,112,859 to 1,113,749 _RS05290 ABZR87_RS05295: ABZR87_RS05295 - NAD(P)/FAD-dependent oxidoreductase, at 1,113,851 to 1,115,284 _RS05295 ABZR87_RS05300: ABZR87_RS05300 - patatin-like phospholipase family protein, at 1,115,393 to 1,116,286 _RS05300 ABZR87_RS05305: ABZR87_RS05305 - TetR family transcriptional regulator, at 1,116,283 to 1,116,954 _RS05305 Position (kb) 1113 1114 1115 1116Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1112.934 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.935 kb on + strandat 1112.936 kb on - strandat 1112.936 kb on - strandat 1112.936 kb on - strandat 1112.936 kb on - strandat 1112.936 kb on - strandat 1112.936 kb on - strandat 1113.022 kb on + strand, within ABZR87_RS05290at 1113.022 kb on + strand, within ABZR87_RS05290at 1113.022 kb on + strand, within ABZR87_RS05290at 1113.022 kb on + strand, within ABZR87_RS05290at 1113.022 kb on + strand, within ABZR87_RS05290at 1113.022 kb on + strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.023 kb on - strand, within ABZR87_RS05290at 1113.113 kb on + strand, within ABZR87_RS05290at 1113.113 kb on + strand, within ABZR87_RS05290at 1113.114 kb on - strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.517 kb on + strand, within ABZR87_RS05290at 1113.518 kb on - strand, within ABZR87_RS05290at 1113.518 kb on - strand, within ABZR87_RS05290at 1113.518 kb on - strand, within ABZR87_RS05290at 1113.518 kb on - strand, within ABZR87_RS05290at 1113.518 kb on - strand, within ABZR87_RS05290at 1113.529 kb on + strand, within ABZR87_RS05290at 1113.529 kb on + strand, within ABZR87_RS05290at 1113.529 kb on + strand, within ABZR87_RS05290at 1113.529 kb on + strand, within ABZR87_RS05290at 1113.530 kb on - strand, within ABZR87_RS05290at 1113.530 kb on - strand, within ABZR87_RS05290at 1113.530 kb on - strand, within ABZR87_RS05290at 1113.530 kb on - strand, within ABZR87_RS05290at 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.733 kb on + strandat 1113.734 kb on - strandat 1113.734 kb on - strandat 1113.734 kb on - strandat 1113.734 kb on - strandat 1113.769 kb on - strandat 1113.769 kb on - strandat 1113.769 kb on - strandat 1113.769 kb on - strandat 1113.802 kb on - strandat 1113.802 kb on - strandat 1113.852 kb on + strandat 1113.852 kb on + strandat 1113.853 kb on - strandat 1113.853 kb on - strandat 1113.853 kb on - strandat 1114.019 kb on + strand, within ABZR87_RS05295at 1114.019 kb on + strand, within ABZR87_RS05295at 1114.019 kb on + strand, within ABZR87_RS05295at 1114.019 kb on + strand, within ABZR87_RS05295at 1114.019 kb on + strand, within ABZR87_RS05295at 1114.019 kb on + strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.020 kb on - strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.281 kb on + strand, within ABZR87_RS05295at 1114.282 kb on - strand, within ABZR87_RS05295at 1114.282 kb on - strand, within ABZR87_RS05295at 1114.369 kb on + strand, within ABZR87_RS05295at 1114.527 kb on + strand, within ABZR87_RS05295at 1114.527 kb on + strand, within ABZR87_RS05295at 1114.528 kb on - strand, within ABZR87_RS05295at 1114.528 kb on - strand, within ABZR87_RS05295at 1115.394 kb on + strandat 1115.469 kb on + strandat 1115.469 kb on + strandat 1115.469 kb on + strandat 1115.469 kb on + strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.470 kb on - strandat 1115.499 kb on + strand, within ABZR87_RS05300at 1115.499 kb on + strand, within ABZR87_RS05300at 1115.499 kb on + strand, within ABZR87_RS05300at 1115.499 kb on + strand, within ABZR87_RS05300at 1115.499 kb on + strand, within ABZR87_RS05300at 1115.500 kb on - strand, within ABZR87_RS05300at 1115.537 kb on + strand, within ABZR87_RS05300at 1115.537 kb on + strand, within ABZR87_RS05300at 1115.537 kb on + strand, within ABZR87_RS05300at 1115.537 kb on + strand, within ABZR87_RS05300at 1115.537 kb on + strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.538 kb on - strand, within ABZR87_RS05300at 1115.541 kb on + strand, within ABZR87_RS05300at 1115.541 kb on + strand, within ABZR87_RS05300at 1115.541 kb on + strand, within ABZR87_RS05300at 1115.541 kb on + strand, within ABZR87_RS05300at 1115.541 kb on + strand, within ABZR87_RS05300at 1115.542 kb on - strand, within ABZR87_RS05300at 1115.542 kb on - strand, within ABZR87_RS05300at 1115.542 kb on - strand, within ABZR87_RS05300at 1115.542 kb on - strand, within ABZR87_RS05300at 1115.542 kb on - strand, within ABZR87_RS05300at 1115.589 kb on + strand, within ABZR87_RS05300at 1115.590 kb on - strand, within ABZR87_RS05300at 1115.590 kb on - strand, within ABZR87_RS05300at 1115.590 kb on - strand, within ABZR87_RS05300at 1115.590 kb on - strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.871 kb on + strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.872 kb on - strand, within ABZR87_RS05300at 1115.923 kb on + strand, within ABZR87_RS05300at 1115.924 kb on - strand, within ABZR87_RS05300at 1115.924 kb on - strand, within ABZR87_RS05300at 1116.009 kb on + strand, within ABZR87_RS05300at 1116.010 kb on - strand, within ABZR87_RS05300at 1116.010 kb on - strand, within ABZR87_RS05300at 1116.010 kb on - strand, within ABZR87_RS05300at 1116.018 kb on + strand, within ABZR87_RS05300at 1116.018 kb on + strand, within ABZR87_RS05300at 1116.018 kb on + strand, within ABZR87_RS05300at 1116.019 kb on - strand, within ABZR87_RS05300at 1116.019 kb on - strand, within ABZR87_RS05300at 1116.019 kb on - strand, within ABZR87_RS05300at 1116.019 kb on - strand, within ABZR87_RS05300at 1116.096 kb on + strand, within ABZR87_RS05300at 1116.096 kb on + strand, within ABZR87_RS05300at 1116.097 kb on - strand, within ABZR87_RS05300at 1116.097 kb on - strand, within ABZR87_RS05300at 1116.099 kb on + strand, within ABZR87_RS05300at 1116.099 kb on + strand, within ABZR87_RS05300at 1116.099 kb on + strand, within ABZR87_RS05300at 1116.099 kb on + strand, within ABZR87_RS05300at 1116.100 kb on - strand, within ABZR87_RS05300at 1116.100 kb on - strand, within ABZR87_RS05300at 1116.100 kb on - strand, within ABZR87_RS05300at 1116.100 kb on - strand, within ABZR87_RS05300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
remove
1,112,934 + +0.0
1,112,935 + +0.3
1,112,935 + -1.2
1,112,935 + +0.9
1,112,935 + -0.4
1,112,935 + -1.1
1,112,935 + +0.2
1,112,935 + +1.2
1,112,935 + +0.8
1,112,935 + +0.1
1,112,935 + +0.5
1,112,936 - +0.5
1,112,936 - +0.9
1,112,936 - -0.3
1,112,936 - +0.1
1,112,936 - +1.8
1,112,936 - -0.6
1,113,022 + ABZR87_RS05290 0.18 +0.2
1,113,022 + ABZR87_RS05290 0.18 +0.3
1,113,022 + ABZR87_RS05290 0.18 +0.2
1,113,022 + ABZR87_RS05290 0.18 -0.9
1,113,022 + ABZR87_RS05290 0.18 -0.1
1,113,022 + ABZR87_RS05290 0.18 +0.4
1,113,023 - ABZR87_RS05290 0.18 +1.0
1,113,023 - ABZR87_RS05290 0.18 -0.3
1,113,023 - ABZR87_RS05290 0.18 +0.8
1,113,023 - ABZR87_RS05290 0.18 +0.7
1,113,023 - ABZR87_RS05290 0.18 -0.2
1,113,023 - ABZR87_RS05290 0.18 -0.5
1,113,113 + ABZR87_RS05290 0.29 -0.6
1,113,113 + ABZR87_RS05290 0.29 +0.5
1,113,114 - ABZR87_RS05290 0.29 +0.3
1,113,517 + ABZR87_RS05290 0.74 +0.4
1,113,517 + ABZR87_RS05290 0.74 +0.6
1,113,517 + ABZR87_RS05290 0.74 -0.2
1,113,517 + ABZR87_RS05290 0.74 +0.4
1,113,517 + ABZR87_RS05290 0.74 -0.4
1,113,517 + ABZR87_RS05290 0.74 -0.4
1,113,518 - ABZR87_RS05290 0.74 -0.5
1,113,518 - ABZR87_RS05290 0.74 +0.4
1,113,518 - ABZR87_RS05290 0.74 +0.0
1,113,518 - ABZR87_RS05290 0.74 +0.4
1,113,518 - ABZR87_RS05290 0.74 +0.5
1,113,529 + ABZR87_RS05290 0.75 +0.1
1,113,529 + ABZR87_RS05290 0.75 -0.2
1,113,529 + ABZR87_RS05290 0.75 -0.2
1,113,529 + ABZR87_RS05290 0.75 -1.1
1,113,530 - ABZR87_RS05290 0.75 -0.2
1,113,530 - ABZR87_RS05290 0.75 +0.1
1,113,530 - ABZR87_RS05290 0.75 +0.4
1,113,530 - ABZR87_RS05290 0.75 +0.2
1,113,733 + -0.8
1,113,733 + -0.4
1,113,733 + +0.1
1,113,733 + +0.2
1,113,733 + +0.6
1,113,733 + -1.2
1,113,733 + +0.1
1,113,734 - +1.4
1,113,734 - -0.1
1,113,734 - +0.8
1,113,734 - +0.5
1,113,769 - -0.6
1,113,769 - -0.5
1,113,769 - -0.8
1,113,769 - +0.1
1,113,802 - -0.0
1,113,802 - +0.6
1,113,852 + -1.1
1,113,852 + +0.2
1,113,853 - +0.1
1,113,853 - -1.1
1,113,853 - -0.6
1,114,019 + ABZR87_RS05295 0.12 +0.4
1,114,019 + ABZR87_RS05295 0.12 +0.1
1,114,019 + ABZR87_RS05295 0.12 +0.1
1,114,019 + ABZR87_RS05295 0.12 +0.1
1,114,019 + ABZR87_RS05295 0.12 -0.2
1,114,019 + ABZR87_RS05295 0.12 -0.8
1,114,020 - ABZR87_RS05295 0.12 +0.2
1,114,020 - ABZR87_RS05295 0.12 -0.2
1,114,020 - ABZR87_RS05295 0.12 +0.1
1,114,020 - ABZR87_RS05295 0.12 -0.9
1,114,020 - ABZR87_RS05295 0.12 +0.7
1,114,020 - ABZR87_RS05295 0.12 +0.4
1,114,020 - ABZR87_RS05295 0.12 +0.0
1,114,281 + ABZR87_RS05295 0.30 -0.3
1,114,281 + ABZR87_RS05295 0.30 +0.3
1,114,281 + ABZR87_RS05295 0.30 -0.0
1,114,281 + ABZR87_RS05295 0.30 -0.6
1,114,281 + ABZR87_RS05295 0.30 +0.8
1,114,281 + ABZR87_RS05295 0.30 -0.1
1,114,282 - ABZR87_RS05295 0.30 -0.2
1,114,282 - ABZR87_RS05295 0.30 -0.3
1,114,369 + ABZR87_RS05295 0.36 +0.0
1,114,527 + ABZR87_RS05295 0.47 +0.1
1,114,527 + ABZR87_RS05295 0.47 +0.0
1,114,528 - ABZR87_RS05295 0.47 -0.3
1,114,528 - ABZR87_RS05295 0.47 +0.4
1,115,394 + +0.1
1,115,469 + -0.4
1,115,469 + +0.8
1,115,469 + -0.0
1,115,469 + -0.1
1,115,470 - -0.4
1,115,470 - +0.8
1,115,470 - -0.2
1,115,470 - +1.2
1,115,470 - +0.1
1,115,470 - -0.1
1,115,470 - +0.2
1,115,470 - -0.6
1,115,499 + ABZR87_RS05300 0.12 +0.0
1,115,499 + ABZR87_RS05300 0.12 -0.7
1,115,499 + ABZR87_RS05300 0.12 +1.4
1,115,499 + ABZR87_RS05300 0.12 +0.5
1,115,499 + ABZR87_RS05300 0.12 -0.4
1,115,500 - ABZR87_RS05300 0.12 +0.4
1,115,537 + ABZR87_RS05300 0.16 -0.5
1,115,537 + ABZR87_RS05300 0.16 -0.4
1,115,537 + ABZR87_RS05300 0.16 -0.3
1,115,537 + ABZR87_RS05300 0.16 -0.2
1,115,537 + ABZR87_RS05300 0.16 -0.4
1,115,538 - ABZR87_RS05300 0.16 -0.1
1,115,538 - ABZR87_RS05300 0.16 +0.1
1,115,538 - ABZR87_RS05300 0.16 -0.7
1,115,538 - ABZR87_RS05300 0.16 +0.1
1,115,538 - ABZR87_RS05300 0.16 -0.2
1,115,538 - ABZR87_RS05300 0.16 -1.0
1,115,541 + ABZR87_RS05300 0.17 +0.3
1,115,541 + ABZR87_RS05300 0.17 +0.6
1,115,541 + ABZR87_RS05300 0.17 -0.9
1,115,541 + ABZR87_RS05300 0.17 -0.3
1,115,541 + ABZR87_RS05300 0.17 -0.0
1,115,542 - ABZR87_RS05300 0.17 +0.5
1,115,542 - ABZR87_RS05300 0.17 +0.9
1,115,542 - ABZR87_RS05300 0.17 -0.1
1,115,542 - ABZR87_RS05300 0.17 +0.0
1,115,542 - ABZR87_RS05300 0.17 -2.0
1,115,589 + ABZR87_RS05300 0.22 +0.1
1,115,590 - ABZR87_RS05300 0.22 -0.4
1,115,590 - ABZR87_RS05300 0.22 -0.4
1,115,590 - ABZR87_RS05300 0.22 +1.3
1,115,590 - ABZR87_RS05300 0.22 -0.5
1,115,871 + ABZR87_RS05300 0.53 +1.2
1,115,871 + ABZR87_RS05300 0.53 -0.2
1,115,871 + ABZR87_RS05300 0.53 -0.2
1,115,871 + ABZR87_RS05300 0.53 -0.4
1,115,871 + ABZR87_RS05300 0.53 -0.6
1,115,871 + ABZR87_RS05300 0.53 -0.7
1,115,871 + ABZR87_RS05300 0.53 +0.5
1,115,872 - ABZR87_RS05300 0.54 -0.1
1,115,872 - ABZR87_RS05300 0.54 +0.4
1,115,872 - ABZR87_RS05300 0.54 +0.0
1,115,872 - ABZR87_RS05300 0.54 -0.9
1,115,872 - ABZR87_RS05300 0.54 -1.1
1,115,872 - ABZR87_RS05300 0.54 -0.1
1,115,872 - ABZR87_RS05300 0.54 -1.1
1,115,872 - ABZR87_RS05300 0.54 +0.5
1,115,872 - ABZR87_RS05300 0.54 -0.0
1,115,923 + ABZR87_RS05300 0.59 -1.1
1,115,924 - ABZR87_RS05300 0.59 -0.4
1,115,924 - ABZR87_RS05300 0.59 -0.9
1,116,009 + ABZR87_RS05300 0.69 -0.4
1,116,010 - ABZR87_RS05300 0.69 +0.6
1,116,010 - ABZR87_RS05300 0.69 +0.5
1,116,010 - ABZR87_RS05300 0.69 +0.3
1,116,018 + ABZR87_RS05300 0.70 +0.2
1,116,018 + ABZR87_RS05300 0.70 +0.6
1,116,018 + ABZR87_RS05300 0.70 -0.3
1,116,019 - ABZR87_RS05300 0.70 -0.0
1,116,019 - ABZR87_RS05300 0.70 -0.9
1,116,019 - ABZR87_RS05300 0.70 +0.6
1,116,019 - ABZR87_RS05300 0.70 -0.9
1,116,096 + ABZR87_RS05300 0.79 +0.2
1,116,096 + ABZR87_RS05300 0.79 +0.0
1,116,097 - ABZR87_RS05300 0.79 +0.3
1,116,097 - ABZR87_RS05300 0.79 +0.2
1,116,099 + ABZR87_RS05300 0.79 +0.9
1,116,099 + ABZR87_RS05300 0.79 +1.0
1,116,099 + ABZR87_RS05300 0.79 -0.9
1,116,099 + ABZR87_RS05300 0.79 -0.4
1,116,100 - ABZR87_RS05300 0.79 +3.2
1,116,100 - ABZR87_RS05300 0.79 +0.2
1,116,100 - ABZR87_RS05300 0.79 +0.0
1,116,100 - ABZR87_RS05300 0.79 +0.9

Or see this region's nucleotide sequence