Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04205

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04195 and ABZR87_RS04200 are separated by 14 nucleotidesABZR87_RS04200 and ABZR87_RS04205 are separated by 80 nucleotidesABZR87_RS04205 and ABZR87_RS04210 are separated by 75 nucleotidesABZR87_RS04210 and ABZR87_RS04215 are separated by 94 nucleotides ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427 _RS04195 ABZR87_RS04200: ABZR87_RS04200 - branched-chain amino acid ABC transporter permease, at 877,442 to 878,326 _RS04200 ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615 _RS04205 ABZR87_RS04210: ABZR87_RS04210 - ABC transporter ATP-binding protein, at 879,691 to 880,431 _RS04210 ABZR87_RS04215: ABZR87_RS04215 - ABC transporter ATP-binding protein, at 880,526 to 881,296 _RS04215 Position (kb) 878 879 880Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 877.531 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.803 kb on + strand, within ABZR87_RS04200at 877.804 kb on - strand, within ABZR87_RS04200at 877.884 kb on + strand, within ABZR87_RS04200at 877.885 kb on - strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.945 kb on - strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 878.025 kb on + strand, within ABZR87_RS04200at 878.026 kb on - strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.124 kb on + strand, within ABZR87_RS04200at 878.140 kb on - strand, within ABZR87_RS04200at 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.254 kb on - strandat 878.254 kb on - strandat 878.401 kb on - strandat 878.489 kb on + strandat 878.490 kb on - strandat 878.490 kb on - strandat 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.585 kb on + strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.735 kb on + strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.916 kb on + strand, within ABZR87_RS04205at 878.978 kb on + strand, within ABZR87_RS04205at 878.979 kb on - strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.488 kb on + strand, within ABZR87_RS04205at 879.488 kb on + strand, within ABZR87_RS04205at 879.490 kb on - strand, within ABZR87_RS04205at 879.512 kb on + strandat 879.512 kb on + strandat 879.512 kb on + strandat 879.513 kb on - strandat 879.513 kb on - strandat 879.578 kb on - strandat 879.692 kb on + strandat 879.692 kb on + strandat 879.782 kb on + strand, within ABZR87_RS04210at 879.782 kb on + strand, within ABZR87_RS04210at 879.840 kb on + strand, within ABZR87_RS04210at 879.841 kb on - strand, within ABZR87_RS04210at 879.841 kb on - strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.855 kb on + strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 879.856 kb on - strand, within ABZR87_RS04210at 880.043 kb on + strand, within ABZR87_RS04210at 880.043 kb on + strand, within ABZR87_RS04210at 880.467 kb on + strandat 880.467 kb on + strandat 880.467 kb on + strandat 880.477 kb on - strandat 880.477 kb on - strandat 880.477 kb on - strandat 880.561 kb on + strandat 880.562 kb on - strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.563 kb on + strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.564 kb on - strandat 880.603 kb on - strand, within ABZR87_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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877,531 - ABZR87_RS04200 0.10 -2.5
877,726 - ABZR87_RS04200 0.32 -1.8
877,726 - ABZR87_RS04200 0.32 -0.8
877,803 + ABZR87_RS04200 0.41 -4.1
877,804 - ABZR87_RS04200 0.41 -3.7
877,884 + ABZR87_RS04200 0.50 -4.3
877,885 - ABZR87_RS04200 0.50 -0.0
877,944 + ABZR87_RS04200 0.57 -4.0
877,944 + ABZR87_RS04200 0.57 -2.0
877,945 - ABZR87_RS04200 0.57 -1.8
877,965 + ABZR87_RS04200 0.59 -2.7
877,965 + ABZR87_RS04200 0.59 -2.8
877,965 + ABZR87_RS04200 0.59 -2.5
877,965 + ABZR87_RS04200 0.59 -1.2
877,966 - ABZR87_RS04200 0.59 -0.7
877,966 - ABZR87_RS04200 0.59 -1.3
877,966 - ABZR87_RS04200 0.59 -2.6
878,025 + ABZR87_RS04200 0.66 -2.5
878,026 - ABZR87_RS04200 0.66 -2.6
878,043 + ABZR87_RS04200 0.68 -2.4
878,043 + ABZR87_RS04200 0.68 -4.0
878,044 - ABZR87_RS04200 0.68 -3.8
878,044 - ABZR87_RS04200 0.68 -3.3
878,044 - ABZR87_RS04200 0.68 -2.1
878,124 + ABZR87_RS04200 0.77 -2.5
878,140 - ABZR87_RS04200 0.79 -4.8
878,253 + -2.8
878,253 + -3.5
878,253 + -3.0
878,253 + -2.8
878,253 + -2.0
878,253 + -3.0
878,253 + -3.7
878,253 + -2.3
878,254 - -1.9
878,254 - -4.0
878,401 - -0.9
878,489 + -2.4
878,490 - +0.3
878,490 - +0.9
878,537 + ABZR87_RS04205 0.11 -2.7
878,537 + ABZR87_RS04205 0.11 -2.9
878,537 + ABZR87_RS04205 0.11 -2.8
878,537 + ABZR87_RS04205 0.11 -2.0
878,537 + ABZR87_RS04205 0.11 -1.9
878,537 + ABZR87_RS04205 0.11 -2.3
878,538 - ABZR87_RS04205 0.11 +0.8
878,538 - ABZR87_RS04205 0.11 +1.2
878,538 - ABZR87_RS04205 0.11 -1.0
878,538 - ABZR87_RS04205 0.11 -0.8
878,538 - ABZR87_RS04205 0.11 +1.1
878,538 - ABZR87_RS04205 0.11 -0.7
878,585 + ABZR87_RS04205 0.15 -3.0
878,586 - ABZR87_RS04205 0.15 -0.4
878,586 - ABZR87_RS04205 0.15 -0.2
878,586 - ABZR87_RS04205 0.15 +1.0
878,669 + ABZR87_RS04205 0.22 -0.9
878,669 + ABZR87_RS04205 0.22 -2.1
878,669 + ABZR87_RS04205 0.22 -2.5
878,669 + ABZR87_RS04205 0.22 -1.5
878,669 + ABZR87_RS04205 0.22 -4.1
878,670 - ABZR87_RS04205 0.22 -0.1
878,670 - ABZR87_RS04205 0.22 +1.5
878,670 - ABZR87_RS04205 0.22 -1.0
878,670 - ABZR87_RS04205 0.22 -1.3
878,735 + ABZR87_RS04205 0.27 -2.6
878,736 - ABZR87_RS04205 0.27 +0.3
878,736 - ABZR87_RS04205 0.27 -0.2
878,778 - ABZR87_RS04205 0.31 -0.9
878,778 - ABZR87_RS04205 0.31 +0.9
878,826 + ABZR87_RS04205 0.35 -2.8
878,826 + ABZR87_RS04205 0.35 -1.1
878,826 + ABZR87_RS04205 0.35 -1.9
878,826 + ABZR87_RS04205 0.35 -4.0
878,826 + ABZR87_RS04205 0.35 -1.3
878,826 + ABZR87_RS04205 0.35 -3.1
878,826 + ABZR87_RS04205 0.35 -2.4
878,826 + ABZR87_RS04205 0.35 -3.0
878,827 - ABZR87_RS04205 0.35 -0.1
878,827 - ABZR87_RS04205 0.35 -0.2
878,827 - ABZR87_RS04205 0.35 +0.4
878,916 + ABZR87_RS04205 0.42 -4.3
878,978 + ABZR87_RS04205 0.47 -2.0
878,979 - ABZR87_RS04205 0.47 -2.0
879,173 + ABZR87_RS04205 0.63 -2.0
879,173 + ABZR87_RS04205 0.63 -3.2
879,174 - ABZR87_RS04205 0.63 -1.0
879,174 - ABZR87_RS04205 0.63 -2.0
879,174 - ABZR87_RS04205 0.63 -2.1
879,174 - ABZR87_RS04205 0.63 -2.2
879,174 - ABZR87_RS04205 0.63 -1.1
879,174 - ABZR87_RS04205 0.63 -3.0
879,174 - ABZR87_RS04205 0.63 +0.9
879,179 + ABZR87_RS04205 0.64 -1.6
879,179 + ABZR87_RS04205 0.64 -2.2
879,180 - ABZR87_RS04205 0.64 -1.4
879,180 - ABZR87_RS04205 0.64 -0.9
879,180 - ABZR87_RS04205 0.64 -1.4
879,180 - ABZR87_RS04205 0.64 -1.6
879,488 + ABZR87_RS04205 0.89 -3.1
879,488 + ABZR87_RS04205 0.89 -0.4
879,490 - ABZR87_RS04205 0.90 -0.5
879,512 + -2.3
879,512 + -2.1
879,512 + -2.5
879,513 - -2.3
879,513 - -2.6
879,578 - +0.4
879,692 + -3.3
879,692 + -1.5
879,782 + ABZR87_RS04210 0.12 -0.8
879,782 + ABZR87_RS04210 0.12 -3.0
879,840 + ABZR87_RS04210 0.20 -2.5
879,841 - ABZR87_RS04210 0.20 -2.7
879,841 - ABZR87_RS04210 0.20 -1.9
879,855 + ABZR87_RS04210 0.22 -3.5
879,855 + ABZR87_RS04210 0.22 -2.1
879,855 + ABZR87_RS04210 0.22 -2.7
879,855 + ABZR87_RS04210 0.22 -2.7
879,855 + ABZR87_RS04210 0.22 -3.4
879,856 - ABZR87_RS04210 0.22 -3.3
879,856 - ABZR87_RS04210 0.22 -3.9
879,856 - ABZR87_RS04210 0.22 -3.9
880,043 + ABZR87_RS04210 0.48 -2.8
880,043 + ABZR87_RS04210 0.48 -2.1
880,467 + -2.6
880,467 + -1.5
880,467 + -3.0
880,477 - +0.8
880,477 - +0.3
880,477 - -0.3
880,561 + -2.6
880,562 - -3.8
880,563 + -2.1
880,563 + -1.1
880,563 + -2.6
880,563 + -2.6
880,563 + -1.9
880,563 + -3.5
880,563 + -3.0
880,563 + -2.1
880,564 - -3.1
880,564 - -1.0
880,564 - -2.7
880,564 - -4.1
880,564 - -1.3
880,564 - -3.8
880,564 - -2.8
880,564 - -3.0
880,603 - ABZR87_RS04215 0.10 -0.6

Or see this region's nucleotide sequence