Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02560

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02555 and ABZR87_RS02560 are separated by 228 nucleotidesABZR87_RS02560 and ABZR87_RS02565 are separated by 175 nucleotides ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724 _RS02555 ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984 _RS02560 ABZR87_RS02565: ABZR87_RS02565 - glutamate synthase subunit beta, at 541,160 to 542,623 _RS02565 Position (kb) 539 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 539.069 kb on + strand, within ABZR87_RS02555at 539.069 kb on + strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.214 kb on - strand, within ABZR87_RS02555at 539.376 kb on + strand, within ABZR87_RS02555at 539.376 kb on + strand, within ABZR87_RS02555at 539.377 kb on - strand, within ABZR87_RS02555at 539.474 kb on + strand, within ABZR87_RS02555at 539.474 kb on + strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.670 kb on - strandat 539.764 kb on - strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.824 kb on - strandat 539.862 kb on + strandat 539.955 kb on - strandat 540.092 kb on - strand, within ABZR87_RS02560at 540.118 kb on + strand, within ABZR87_RS02560at 540.118 kb on + strand, within ABZR87_RS02560at 540.118 kb on + strand, within ABZR87_RS02560at 540.118 kb on + strand, within ABZR87_RS02560at 540.118 kb on + strand, within ABZR87_RS02560at 540.119 kb on - strand, within ABZR87_RS02560at 540.119 kb on - strand, within ABZR87_RS02560at 540.119 kb on - strand, within ABZR87_RS02560at 540.317 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.838 kb on - strand, within ABZR87_RS02560at 541.019 kb on + strandat 541.019 kb on + strandat 541.020 kb on - strandat 541.020 kb on - strandat 541.050 kb on + strandat 541.050 kb on + strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.065 kb on + strandat 541.065 kb on + strandat 541.066 kb on - strandat 541.302 kb on + strandat 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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539,069 + ABZR87_RS02555 0.21 -1.3
539,069 + ABZR87_RS02555 0.21 -0.2
539,070 - ABZR87_RS02555 0.21 -1.1
539,070 - ABZR87_RS02555 0.21 +0.3
539,070 - ABZR87_RS02555 0.21 +0.6
539,076 - ABZR87_RS02555 0.22 +0.5
539,076 - ABZR87_RS02555 0.22 +0.1
539,076 - ABZR87_RS02555 0.22 -0.7
539,076 - ABZR87_RS02555 0.22 +0.8
539,076 - ABZR87_RS02555 0.22 -1.1
539,076 - ABZR87_RS02555 0.22 -0.2
539,076 - ABZR87_RS02555 0.22 -0.9
539,076 - ABZR87_RS02555 0.22 -0.7
539,101 + ABZR87_RS02555 0.25 +0.5
539,101 + ABZR87_RS02555 0.25 +0.3
539,101 + ABZR87_RS02555 0.25 -0.1
539,102 - ABZR87_RS02555 0.25 -0.8
539,102 - ABZR87_RS02555 0.25 -0.3
539,102 - ABZR87_RS02555 0.25 +1.6
539,213 + ABZR87_RS02555 0.39 -0.6
539,213 + ABZR87_RS02555 0.39 -1.1
539,213 + ABZR87_RS02555 0.39 +0.4
539,213 + ABZR87_RS02555 0.39 +0.3
539,214 - ABZR87_RS02555 0.39 +0.0
539,376 + ABZR87_RS02555 0.58 +0.1
539,376 + ABZR87_RS02555 0.58 -0.3
539,377 - ABZR87_RS02555 0.58 -0.3
539,474 + ABZR87_RS02555 0.70 -0.3
539,474 + ABZR87_RS02555 0.70 -0.8
539,475 - ABZR87_RS02555 0.70 -0.3
539,475 - ABZR87_RS02555 0.70 +1.2
539,475 - ABZR87_RS02555 0.70 +0.7
539,475 - ABZR87_RS02555 0.70 -0.1
539,475 - ABZR87_RS02555 0.70 -0.2
539,475 - ABZR87_RS02555 0.70 -0.4
539,670 - -1.4
539,764 - +0.1
539,821 + +0.6
539,821 + +0.5
539,821 + +1.7
539,821 + +0.9
539,821 + +0.3
539,822 - +0.1
539,822 - +0.2
539,822 - -1.0
539,822 - -0.3
539,822 - +0.1
539,823 + +0.6
539,823 + -0.8
539,823 + -0.2
539,823 + +0.1
539,823 + -1.1
539,823 + +0.5
539,823 + +0.7
539,824 - -1.6
539,862 + -1.2
539,955 - +0.4
540,092 - ABZR87_RS02560 0.13 +3.3
540,118 + ABZR87_RS02560 0.16 +1.7
540,118 + ABZR87_RS02560 0.16 +1.4
540,118 + ABZR87_RS02560 0.16 +1.4
540,118 + ABZR87_RS02560 0.16 +0.5
540,118 + ABZR87_RS02560 0.16 +2.3
540,119 - ABZR87_RS02560 0.16 +1.2
540,119 - ABZR87_RS02560 0.16 +1.3
540,119 - ABZR87_RS02560 0.16 +0.3
540,317 + ABZR87_RS02560 0.35 +0.9
540,410 + ABZR87_RS02560 0.44 -1.1
540,410 + ABZR87_RS02560 0.44 +1.6
540,411 - ABZR87_RS02560 0.44 +1.3
540,411 - ABZR87_RS02560 0.44 +1.9
540,411 - ABZR87_RS02560 0.44 +1.5
540,608 + ABZR87_RS02560 0.63 +0.9
540,608 + ABZR87_RS02560 0.63 +1.9
540,609 - ABZR87_RS02560 0.64 +1.7
540,609 - ABZR87_RS02560 0.64 +0.5
540,666 + ABZR87_RS02560 0.69 +2.4
540,666 + ABZR87_RS02560 0.69 +0.6
540,666 + ABZR87_RS02560 0.69 +1.5
540,666 + ABZR87_RS02560 0.69 +0.9
540,666 + ABZR87_RS02560 0.69 +1.3
540,666 + ABZR87_RS02560 0.69 +1.1
540,666 + ABZR87_RS02560 0.69 +2.0
540,666 + ABZR87_RS02560 0.69 +0.3
540,666 + ABZR87_RS02560 0.69 +0.9
540,666 + ABZR87_RS02560 0.69 +1.2
540,666 + ABZR87_RS02560 0.69 +1.6
540,666 + ABZR87_RS02560 0.69 +1.1
540,666 + ABZR87_RS02560 0.69 +0.5
540,667 - ABZR87_RS02560 0.69 +0.3
540,667 - ABZR87_RS02560 0.69 -0.2
540,667 - ABZR87_RS02560 0.69 +0.3
540,667 - ABZR87_RS02560 0.69 +0.9
540,667 - ABZR87_RS02560 0.69 +1.1
540,736 + ABZR87_RS02560 0.76 +0.6
540,736 + ABZR87_RS02560 0.76 +0.9
540,736 + ABZR87_RS02560 0.76 +0.7
540,737 - ABZR87_RS02560 0.76 +0.9
540,737 - ABZR87_RS02560 0.76 +1.3
540,737 - ABZR87_RS02560 0.76 +1.1
540,837 + ABZR87_RS02560 0.86 +0.7
540,837 + ABZR87_RS02560 0.86 +0.6
540,837 + ABZR87_RS02560 0.86 -0.3
540,838 - ABZR87_RS02560 0.86 +0.8
541,019 + +1.3
541,019 + -0.2
541,020 - -0.1
541,020 - -0.2
541,050 + +0.6
541,050 + +1.0
541,051 - -1.7
541,051 - +0.3
541,051 - -0.3
541,051 - +0.5
541,065 + +0.2
541,065 + +1.5
541,066 - +0.1
541,302 + -3.3
541,393 + ABZR87_RS02565 0.16 -1.5
541,393 + ABZR87_RS02565 0.16 -3.7
541,393 + ABZR87_RS02565 0.16 -3.0
541,394 - ABZR87_RS02565 0.16 -3.5
541,394 - ABZR87_RS02565 0.16 -4.3
541,602 + ABZR87_RS02565 0.30 -3.7
541,602 + ABZR87_RS02565 0.30 -1.1
541,819 - ABZR87_RS02565 0.45 -2.4
541,819 - ABZR87_RS02565 0.45 -3.5

Or see this region's nucleotide sequence