Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02050

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02045 and ABZR87_RS02050 are separated by 54 nucleotidesABZR87_RS02050 and ABZR87_RS02055 are separated by 148 nucleotides ABZR87_RS02045: ABZR87_RS02045 - 1-phosphofructokinase, at 438,968 to 439,924 _RS02045 ABZR87_RS02050: ABZR87_RS02050 - fructose-specific PTS transporter subunit EIIC, at 439,979 to 441,694 _RS02050 ABZR87_RS02055: ABZR87_RS02055 - ABC transporter substrate-binding protein, at 441,843 to 443,000 _RS02055 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 439.421 kb on + strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.422 kb on - strand, within ABZR87_RS02045at 439.573 kb on + strand, within ABZR87_RS02045at 439.573 kb on + strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.574 kb on - strand, within ABZR87_RS02045at 439.733 kb on - strand, within ABZR87_RS02045at 439.733 kb on - strand, within ABZR87_RS02045at 440.075 kb on + strandat 440.076 kb on - strandat 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.684 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.777 kb on + strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.778 kb on - strand, within ABZR87_RS02050at 440.876 kb on + strand, within ABZR87_RS02050at 440.876 kb on + strand, within ABZR87_RS02050at 440.885 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.110 kb on + strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.111 kb on - strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.257 kb on + strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.258 kb on - strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.293 kb on + strand, within ABZR87_RS02050at 441.294 kb on - strand, within ABZR87_RS02050at 441.294 kb on - strand, within ABZR87_RS02050at 441.455 kb on + strand, within ABZR87_RS02050at 441.455 kb on + strand, within ABZR87_RS02050at 441.612 kb on - strandat 441.612 kb on - strandat 441.803 kb on + strandat 441.803 kb on + strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.804 kb on - strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.807 kb on + strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.808 kb on - strandat 441.934 kb on + strandat 441.934 kb on + strandat 441.935 kb on - strandat 441.935 kb on - strandat 441.935 kb on - strandat 442.026 kb on + strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.027 kb on - strand, within ABZR87_RS02055at 442.099 kb on - strand, within ABZR87_RS02055at 442.124 kb on + strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.171 kb on - strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.374 kb on + strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.390 kb on - strand, within ABZR87_RS02055at 442.557 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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439,421 + ABZR87_RS02045 0.47 -0.8
439,422 - ABZR87_RS02045 0.47 +1.1
439,422 - ABZR87_RS02045 0.47 +0.2
439,422 - ABZR87_RS02045 0.47 +0.4
439,422 - ABZR87_RS02045 0.47 -1.0
439,573 + ABZR87_RS02045 0.63 -1.0
439,573 + ABZR87_RS02045 0.63 -0.8
439,574 - ABZR87_RS02045 0.63 -0.4
439,574 - ABZR87_RS02045 0.63 -0.1
439,574 - ABZR87_RS02045 0.63 +0.1
439,574 - ABZR87_RS02045 0.63 -1.3
439,733 - ABZR87_RS02045 0.80 +1.1
439,733 - ABZR87_RS02045 0.80 -0.9
440,075 + -1.3
440,076 - -0.2
440,684 + ABZR87_RS02050 0.41 +1.2
440,684 + ABZR87_RS02050 0.41 -0.5
440,684 + ABZR87_RS02050 0.41 -1.2
440,684 + ABZR87_RS02050 0.41 -0.3
440,777 + ABZR87_RS02050 0.47 -0.8
440,777 + ABZR87_RS02050 0.47 +0.4
440,777 + ABZR87_RS02050 0.47 +0.1
440,777 + ABZR87_RS02050 0.47 +0.1
440,777 + ABZR87_RS02050 0.47 -1.1
440,777 + ABZR87_RS02050 0.47 +0.3
440,777 + ABZR87_RS02050 0.47 +2.2
440,777 + ABZR87_RS02050 0.47 +0.8
440,777 + ABZR87_RS02050 0.47 -0.1
440,777 + ABZR87_RS02050 0.47 -0.6
440,777 + ABZR87_RS02050 0.47 -0.9
440,777 + ABZR87_RS02050 0.47 -0.4
440,777 + ABZR87_RS02050 0.47 +0.8
440,778 - ABZR87_RS02050 0.47 -0.9
440,778 - ABZR87_RS02050 0.47 +0.7
440,778 - ABZR87_RS02050 0.47 +0.3
440,778 - ABZR87_RS02050 0.47 -0.2
440,778 - ABZR87_RS02050 0.47 -0.5
440,778 - ABZR87_RS02050 0.47 +0.4
440,778 - ABZR87_RS02050 0.47 -0.1
440,778 - ABZR87_RS02050 0.47 -0.4
440,778 - ABZR87_RS02050 0.47 -0.6
440,778 - ABZR87_RS02050 0.47 +0.6
440,778 - ABZR87_RS02050 0.47 +0.5
440,778 - ABZR87_RS02050 0.47 +0.3
440,778 - ABZR87_RS02050 0.47 -0.2
440,876 + ABZR87_RS02050 0.52 +0.9
440,876 + ABZR87_RS02050 0.52 +0.5
440,885 + ABZR87_RS02050 0.53 +0.8
441,110 + ABZR87_RS02050 0.66 -0.7
441,110 + ABZR87_RS02050 0.66 +1.6
441,110 + ABZR87_RS02050 0.66 -0.8
441,110 + ABZR87_RS02050 0.66 +0.1
441,110 + ABZR87_RS02050 0.66 +0.3
441,110 + ABZR87_RS02050 0.66 -0.8
441,110 + ABZR87_RS02050 0.66 -0.8
441,110 + ABZR87_RS02050 0.66 +0.7
441,110 + ABZR87_RS02050 0.66 -1.7
441,110 + ABZR87_RS02050 0.66 -0.7
441,110 + ABZR87_RS02050 0.66 +0.1
441,111 - ABZR87_RS02050 0.66 -0.6
441,111 - ABZR87_RS02050 0.66 -0.3
441,111 - ABZR87_RS02050 0.66 -0.4
441,111 - ABZR87_RS02050 0.66 -1.3
441,111 - ABZR87_RS02050 0.66 -0.2
441,111 - ABZR87_RS02050 0.66 +0.2
441,111 - ABZR87_RS02050 0.66 -1.8
441,111 - ABZR87_RS02050 0.66 +1.7
441,111 - ABZR87_RS02050 0.66 +0.2
441,111 - ABZR87_RS02050 0.66 +0.1
441,257 + ABZR87_RS02050 0.74 -0.1
441,257 + ABZR87_RS02050 0.74 -0.1
441,257 + ABZR87_RS02050 0.74 -0.6
441,258 - ABZR87_RS02050 0.75 +0.5
441,258 - ABZR87_RS02050 0.75 +0.4
441,258 - ABZR87_RS02050 0.75 -0.1
441,258 - ABZR87_RS02050 0.75 +0.8
441,293 + ABZR87_RS02050 0.77 -1.3
441,293 + ABZR87_RS02050 0.77 +0.4
441,293 + ABZR87_RS02050 0.77 -0.3
441,294 - ABZR87_RS02050 0.77 -0.1
441,294 - ABZR87_RS02050 0.77 -0.7
441,455 + ABZR87_RS02050 0.86 +1.2
441,455 + ABZR87_RS02050 0.86 +0.0
441,612 - -1.1
441,612 - +0.6
441,803 + -0.1
441,803 + +0.1
441,804 - -1.3
441,804 - +0.7
441,804 - -0.2
441,804 - -1.7
441,804 - +1.4
441,807 + +0.4
441,807 + +0.5
441,807 + +0.9
441,807 + -0.3
441,808 - -0.2
441,808 - +0.1
441,808 - +0.1
441,808 - -0.6
441,934 + +1.0
441,934 + +1.0
441,935 - +0.2
441,935 - -0.5
441,935 - -0.9
442,026 + ABZR87_RS02055 0.16 -0.9
442,027 - ABZR87_RS02055 0.16 +0.1
442,027 - ABZR87_RS02055 0.16 +0.4
442,027 - ABZR87_RS02055 0.16 +0.1
442,027 - ABZR87_RS02055 0.16 +0.4
442,099 - ABZR87_RS02055 0.22 -0.1
442,124 + ABZR87_RS02055 0.24 -0.4
442,125 - ABZR87_RS02055 0.24 -0.2
442,125 - ABZR87_RS02055 0.24 +0.7
442,170 + ABZR87_RS02055 0.28 +0.5
442,170 + ABZR87_RS02055 0.28 -0.6
442,171 - ABZR87_RS02055 0.28 -1.1
442,305 + ABZR87_RS02055 0.40 +0.3
442,305 + ABZR87_RS02055 0.40 +1.7
442,374 + ABZR87_RS02055 0.46 -1.6
442,375 - ABZR87_RS02055 0.46 -0.1
442,375 - ABZR87_RS02055 0.46 +0.0
442,375 - ABZR87_RS02055 0.46 -1.6
442,375 - ABZR87_RS02055 0.46 +0.4
442,390 - ABZR87_RS02055 0.47 -0.0
442,557 + ABZR87_RS02055 0.62 +0.2
442,617 + ABZR87_RS02055 0.67 -0.4
442,617 + ABZR87_RS02055 0.67 +1.1
442,617 + ABZR87_RS02055 0.67 -0.1
442,618 - ABZR87_RS02055 0.67 -1.0
442,618 - ABZR87_RS02055 0.67 +0.0
442,618 - ABZR87_RS02055 0.67 -0.2
442,618 - ABZR87_RS02055 0.67 +0.3
442,618 - ABZR87_RS02055 0.67 +0.6
442,624 + ABZR87_RS02055 0.67 +0.2
442,624 + ABZR87_RS02055 0.67 +0.2
442,624 + ABZR87_RS02055 0.67 -0.6
442,625 - ABZR87_RS02055 0.68 +0.9
442,625 - ABZR87_RS02055 0.68 -0.4
442,625 - ABZR87_RS02055 0.68 -0.5
442,625 - ABZR87_RS02055 0.68 -0.6
442,625 - ABZR87_RS02055 0.68 +0.8
442,625 - ABZR87_RS02055 0.68 -0.3
442,655 + ABZR87_RS02055 0.70 -0.5
442,655 + ABZR87_RS02055 0.70 +0.2
442,655 + ABZR87_RS02055 0.70 +0.1
442,656 - ABZR87_RS02055 0.70 +0.6
442,656 - ABZR87_RS02055 0.70 +0.2

Or see this region's nucleotide sequence