Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06795

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06785 and RS_RS06790 are separated by 27 nucleotidesRS_RS06790 and RS_RS06795 overlap by 8 nucleotidesRS_RS06795 and RS_RS06800 are separated by 177 nucleotides RS_RS06785: RS_RS06785 - thiamine pyrophosphate protein, at 1,440,421 to 1,442,166 _RS06785 RS_RS06790: RS_RS06790 - ribonuclease E inhibitor RraA, at 1,442,194 to 1,442,700 _RS06790 RS_RS06795: RS_RS06795 - gamma-glutamylcyclotransferase, at 1,442,693 to 1,443,106 _RS06795 RS_RS06800: RS_RS06800 - GALA protein, at 1,443,284 to 1,445,146 _RS06800 Position (kb) 1442 1443 1444Strain fitness (log2 ratio) -1 0 1at 1441.906 kb on + strand, within RS_RS06785at 1441.906 kb on + strand, within RS_RS06785at 1441.906 kb on + strand, within RS_RS06785at 1441.906 kb on + strand, within RS_RS06785at 1441.907 kb on - strand, within RS_RS06785at 1441.907 kb on - strand, within RS_RS06785at 1442.626 kb on + strand, within RS_RS06790at 1442.650 kb on + strandat 1442.650 kb on + strandat 1442.828 kb on + strand, within RS_RS06795at 1442.828 kb on + strand, within RS_RS06795at 1442.829 kb on - strand, within RS_RS06795at 1442.894 kb on + strand, within RS_RS06795at 1442.945 kb on + strand, within RS_RS06795at 1443.267 kb on - strandat 1443.267 kb on - strandat 1443.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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1,441,906 + RS_RS06785 0.85 +0.3
1,441,906 + RS_RS06785 0.85 +0.1
1,441,906 + RS_RS06785 0.85 -0.1
1,441,906 + RS_RS06785 0.85 -0.4
1,441,907 - RS_RS06785 0.85 +0.2
1,441,907 - RS_RS06785 0.85 +0.6
1,442,626 + RS_RS06790 0.85 +1.5
1,442,650 + -0.6
1,442,650 + +0.3
1,442,828 + RS_RS06795 0.33 -0.6
1,442,828 + RS_RS06795 0.33 -0.0
1,442,829 - RS_RS06795 0.33 +0.6
1,442,894 + RS_RS06795 0.49 +0.3
1,442,945 + RS_RS06795 0.61 +0.0
1,443,267 - +0.0
1,443,267 - -0.5
1,443,270 + +0.3

Or see this region's nucleotide sequence