Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23570

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23565 and ABZR87_RS23570 are separated by 53 nucleotidesABZR87_RS23570 and ABZR87_RS23575 are separated by 90 nucleotides ABZR87_RS23565: ABZR87_RS23565 - AI-2E family transporter, at 1,644,598 to 1,645,854 _RS23565 ABZR87_RS23570: ABZR87_RS23570 - PAS domain-containing protein, at 1,645,908 to 1,648,325 _RS23570 ABZR87_RS23575: ABZR87_RS23575 - DUF4397 domain-containing protein, at 1,648,416 to 1,649,198 _RS23575 Position (kb) 1645 1646 1647 1648 1649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1644.948 kb on - strand, within ABZR87_RS23565at 1644.988 kb on + strand, within ABZR87_RS23565at 1644.989 kb on - strand, within ABZR87_RS23565at 1644.992 kb on + strand, within ABZR87_RS23565at 1644.992 kb on + strand, within ABZR87_RS23565at 1644.992 kb on + strand, within ABZR87_RS23565at 1644.993 kb on - strand, within ABZR87_RS23565at 1644.993 kb on - strand, within ABZR87_RS23565at 1645.121 kb on + strand, within ABZR87_RS23565at 1645.241 kb on + strand, within ABZR87_RS23565at 1645.242 kb on - strand, within ABZR87_RS23565at 1645.306 kb on + strand, within ABZR87_RS23565at 1645.306 kb on + strand, within ABZR87_RS23565at 1645.306 kb on + strand, within ABZR87_RS23565at 1645.482 kb on + strand, within ABZR87_RS23565at 1645.482 kb on + strand, within ABZR87_RS23565at 1645.597 kb on + strand, within ABZR87_RS23565at 1645.597 kb on + strand, within ABZR87_RS23565at 1645.597 kb on + strand, within ABZR87_RS23565at 1645.598 kb on - strand, within ABZR87_RS23565at 1645.909 kb on + strandat 1645.909 kb on + strandat 1645.910 kb on - strandat 1645.940 kb on + strandat 1646.378 kb on + strand, within ABZR87_RS23570at 1646.378 kb on + strand, within ABZR87_RS23570at 1646.411 kb on - strand, within ABZR87_RS23570at 1646.411 kb on - strand, within ABZR87_RS23570at 1646.411 kb on - strand, within ABZR87_RS23570at 1646.411 kb on - strand, within ABZR87_RS23570at 1646.418 kb on - strand, within ABZR87_RS23570at 1646.418 kb on - strand, within ABZR87_RS23570at 1646.455 kb on + strand, within ABZR87_RS23570at 1646.455 kb on + strand, within ABZR87_RS23570at 1646.455 kb on + strand, within ABZR87_RS23570at 1646.456 kb on - strand, within ABZR87_RS23570at 1646.456 kb on - strand, within ABZR87_RS23570at 1646.569 kb on + strand, within ABZR87_RS23570at 1646.569 kb on + strand, within ABZR87_RS23570at 1646.569 kb on + strand, within ABZR87_RS23570at 1646.570 kb on - strand, within ABZR87_RS23570at 1646.570 kb on - strand, within ABZR87_RS23570at 1646.570 kb on - strand, within ABZR87_RS23570at 1646.570 kb on - strand, within ABZR87_RS23570at 1646.706 kb on + strand, within ABZR87_RS23570at 1646.706 kb on + strand, within ABZR87_RS23570at 1646.707 kb on - strand, within ABZR87_RS23570at 1646.707 kb on - strand, within ABZR87_RS23570at 1647.001 kb on + strand, within ABZR87_RS23570at 1647.001 kb on + strand, within ABZR87_RS23570at 1647.001 kb on + strand, within ABZR87_RS23570at 1647.002 kb on - strand, within ABZR87_RS23570at 1647.002 kb on - strand, within ABZR87_RS23570at 1647.117 kb on + strand, within ABZR87_RS23570at 1647.117 kb on + strand, within ABZR87_RS23570at 1647.169 kb on + strand, within ABZR87_RS23570at 1647.170 kb on - strand, within ABZR87_RS23570at 1647.236 kb on - strand, within ABZR87_RS23570at 1647.236 kb on - strand, within ABZR87_RS23570at 1647.236 kb on - strand, within ABZR87_RS23570at 1647.236 kb on - strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.433 kb on + strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.434 kb on - strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.435 kb on + strand, within ABZR87_RS23570at 1647.436 kb on - strand, within ABZR87_RS23570at 1647.436 kb on - strand, within ABZR87_RS23570at 1647.436 kb on - strand, within ABZR87_RS23570at 1647.436 kb on - strand, within ABZR87_RS23570at 1647.721 kb on + strand, within ABZR87_RS23570at 1647.721 kb on + strand, within ABZR87_RS23570at 1647.722 kb on - strand, within ABZR87_RS23570at 1647.796 kb on + strand, within ABZR87_RS23570at 1647.796 kb on + strand, within ABZR87_RS23570at 1647.796 kb on + strand, within ABZR87_RS23570at 1647.796 kb on + strand, within ABZR87_RS23570at 1647.797 kb on - strand, within ABZR87_RS23570at 1647.985 kb on + strand, within ABZR87_RS23570at 1647.986 kb on - strand, within ABZR87_RS23570at 1648.006 kb on + strand, within ABZR87_RS23570at 1648.006 kb on + strand, within ABZR87_RS23570at 1648.006 kb on + strand, within ABZR87_RS23570at 1648.268 kb on + strandat 1648.268 kb on + strandat 1648.269 kb on - strandat 1648.339 kb on - strandat 1648.386 kb on + strandat 1648.386 kb on + strandat 1648.399 kb on + strandat 1648.399 kb on + strandat 1648.399 kb on + strandat 1648.400 kb on - strandat 1648.400 kb on - strandat 1648.400 kb on - strandat 1648.417 kb on + strandat 1648.615 kb on + strand, within ABZR87_RS23575at 1648.615 kb on + strand, within ABZR87_RS23575at 1648.616 kb on - strand, within ABZR87_RS23575at 1648.616 kb on - strand, within ABZR87_RS23575at 1648.616 kb on - strand, within ABZR87_RS23575at 1648.633 kb on + strand, within ABZR87_RS23575at 1648.633 kb on + strand, within ABZR87_RS23575at 1648.634 kb on - strand, within ABZR87_RS23575at 1648.673 kb on - strand, within ABZR87_RS23575at 1648.673 kb on - strand, within ABZR87_RS23575at 1648.732 kb on + strand, within ABZR87_RS23575at 1648.733 kb on - strand, within ABZR87_RS23575at 1648.756 kb on + strand, within ABZR87_RS23575at 1648.757 kb on - strand, within ABZR87_RS23575at 1648.757 kb on - strand, within ABZR87_RS23575at 1648.810 kb on + strand, within ABZR87_RS23575at 1648.810 kb on + strand, within ABZR87_RS23575at 1648.811 kb on - strand, within ABZR87_RS23575at 1648.811 kb on - strand, within ABZR87_RS23575at 1648.811 kb on - strand, within ABZR87_RS23575at 1648.875 kb on - strand, within ABZR87_RS23575at 1648.876 kb on + strand, within ABZR87_RS23575at 1648.876 kb on + strand, within ABZR87_RS23575at 1648.876 kb on + strand, within ABZR87_RS23575at 1648.877 kb on - strand, within ABZR87_RS23575at 1648.922 kb on + strand, within ABZR87_RS23575at 1648.922 kb on + strand, within ABZR87_RS23575at 1648.922 kb on + strand, within ABZR87_RS23575at 1648.922 kb on + strand, within ABZR87_RS23575at 1648.978 kb on + strand, within ABZR87_RS23575at 1648.978 kb on + strand, within ABZR87_RS23575at 1648.978 kb on + strand, within ABZR87_RS23575at 1648.979 kb on - strand, within ABZR87_RS23575at 1648.979 kb on - strand, within ABZR87_RS23575at 1648.979 kb on - strand, within ABZR87_RS23575at 1649.142 kb on + strandat 1649.142 kb on + strandat 1649.142 kb on + strandat 1649.142 kb on + strandat 1649.142 kb on + strandat 1649.143 kb on - strandat 1649.143 kb on - strandat 1649.143 kb on - strandat 1649.143 kb on - strandat 1649.190 kb on + strandat 1649.190 kb on + strandat 1649.191 kb on - strandat 1649.191 kb on - strandat 1649.289 kb on - strandat 1649.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,644,948 - ABZR87_RS23565 0.28 -0.9
1,644,988 + ABZR87_RS23565 0.31 -0.3
1,644,989 - ABZR87_RS23565 0.31 -0.7
1,644,992 + ABZR87_RS23565 0.31 -0.0
1,644,992 + ABZR87_RS23565 0.31 -0.7
1,644,992 + ABZR87_RS23565 0.31 +0.6
1,644,993 - ABZR87_RS23565 0.31 +0.3
1,644,993 - ABZR87_RS23565 0.31 +0.3
1,645,121 + ABZR87_RS23565 0.42 +1.3
1,645,241 + ABZR87_RS23565 0.51 +3.1
1,645,242 - ABZR87_RS23565 0.51 +0.5
1,645,306 + ABZR87_RS23565 0.56 +0.9
1,645,306 + ABZR87_RS23565 0.56 -0.4
1,645,306 + ABZR87_RS23565 0.56 -0.3
1,645,482 + ABZR87_RS23565 0.70 +0.1
1,645,482 + ABZR87_RS23565 0.70 -0.7
1,645,597 + ABZR87_RS23565 0.79 -0.6
1,645,597 + ABZR87_RS23565 0.79 -0.6
1,645,597 + ABZR87_RS23565 0.79 +0.5
1,645,598 - ABZR87_RS23565 0.80 -0.3
1,645,909 + +0.1
1,645,909 + +0.8
1,645,910 - -0.9
1,645,940 + -1.0
1,646,378 + ABZR87_RS23570 0.19 -1.0
1,646,378 + ABZR87_RS23570 0.19 -2.0
1,646,411 - ABZR87_RS23570 0.21 -1.7
1,646,411 - ABZR87_RS23570 0.21 -1.1
1,646,411 - ABZR87_RS23570 0.21 -1.4
1,646,411 - ABZR87_RS23570 0.21 -1.1
1,646,418 - ABZR87_RS23570 0.21 -0.4
1,646,418 - ABZR87_RS23570 0.21 -1.3
1,646,455 + ABZR87_RS23570 0.23 -2.7
1,646,455 + ABZR87_RS23570 0.23 -1.5
1,646,455 + ABZR87_RS23570 0.23 -0.0
1,646,456 - ABZR87_RS23570 0.23 +0.4
1,646,456 - ABZR87_RS23570 0.23 -2.7
1,646,569 + ABZR87_RS23570 0.27 +0.6
1,646,569 + ABZR87_RS23570 0.27 -0.8
1,646,569 + ABZR87_RS23570 0.27 -1.2
1,646,570 - ABZR87_RS23570 0.27 -0.2
1,646,570 - ABZR87_RS23570 0.27 -1.3
1,646,570 - ABZR87_RS23570 0.27 +1.1
1,646,570 - ABZR87_RS23570 0.27 -1.3
1,646,706 + ABZR87_RS23570 0.33 -0.4
1,646,706 + ABZR87_RS23570 0.33 -0.2
1,646,707 - ABZR87_RS23570 0.33 -3.4
1,646,707 - ABZR87_RS23570 0.33 -0.6
1,647,001 + ABZR87_RS23570 0.45 -0.6
1,647,001 + ABZR87_RS23570 0.45 -0.7
1,647,001 + ABZR87_RS23570 0.45 -1.1
1,647,002 - ABZR87_RS23570 0.45 -0.1
1,647,002 - ABZR87_RS23570 0.45 -0.5
1,647,117 + ABZR87_RS23570 0.50 -0.3
1,647,117 + ABZR87_RS23570 0.50 -3.4
1,647,169 + ABZR87_RS23570 0.52 -0.7
1,647,170 - ABZR87_RS23570 0.52 -0.5
1,647,236 - ABZR87_RS23570 0.55 -0.4
1,647,236 - ABZR87_RS23570 0.55 +1.5
1,647,236 - ABZR87_RS23570 0.55 -0.9
1,647,236 - ABZR87_RS23570 0.55 -0.9
1,647,433 + ABZR87_RS23570 0.63 -2.6
1,647,433 + ABZR87_RS23570 0.63 -1.0
1,647,433 + ABZR87_RS23570 0.63 +1.1
1,647,433 + ABZR87_RS23570 0.63 -0.3
1,647,433 + ABZR87_RS23570 0.63 -0.4
1,647,433 + ABZR87_RS23570 0.63 -0.8
1,647,434 - ABZR87_RS23570 0.63 -1.0
1,647,434 - ABZR87_RS23570 0.63 -1.1
1,647,434 - ABZR87_RS23570 0.63 -0.2
1,647,434 - ABZR87_RS23570 0.63 -1.1
1,647,434 - ABZR87_RS23570 0.63 -0.5
1,647,434 - ABZR87_RS23570 0.63 -1.0
1,647,435 + ABZR87_RS23570 0.63 -1.0
1,647,435 + ABZR87_RS23570 0.63 -0.3
1,647,435 + ABZR87_RS23570 0.63 -0.7
1,647,435 + ABZR87_RS23570 0.63 -3.9
1,647,435 + ABZR87_RS23570 0.63 +0.2
1,647,435 + ABZR87_RS23570 0.63 -0.4
1,647,435 + ABZR87_RS23570 0.63 -0.7
1,647,435 + ABZR87_RS23570 0.63 -0.3
1,647,435 + ABZR87_RS23570 0.63 +0.5
1,647,436 - ABZR87_RS23570 0.63 -0.4
1,647,436 - ABZR87_RS23570 0.63 -1.6
1,647,436 - ABZR87_RS23570 0.63 -0.7
1,647,436 - ABZR87_RS23570 0.63 -0.9
1,647,721 + ABZR87_RS23570 0.75 -1.2
1,647,721 + ABZR87_RS23570 0.75 -0.9
1,647,722 - ABZR87_RS23570 0.75 -1.3
1,647,796 + ABZR87_RS23570 0.78 -0.4
1,647,796 + ABZR87_RS23570 0.78 -0.2
1,647,796 + ABZR87_RS23570 0.78 +0.1
1,647,796 + ABZR87_RS23570 0.78 +1.7
1,647,797 - ABZR87_RS23570 0.78 -1.8
1,647,985 + ABZR87_RS23570 0.86 -2.2
1,647,986 - ABZR87_RS23570 0.86 -3.5
1,648,006 + ABZR87_RS23570 0.87 -1.2
1,648,006 + ABZR87_RS23570 0.87 +0.4
1,648,006 + ABZR87_RS23570 0.87 -0.4
1,648,268 + +0.1
1,648,268 + -1.3
1,648,269 - -0.1
1,648,339 - +0.8
1,648,386 + +0.6
1,648,386 + +1.5
1,648,399 + -0.8
1,648,399 + -0.2
1,648,399 + +0.9
1,648,400 - +1.0
1,648,400 - +0.6
1,648,400 - +0.3
1,648,417 + +0.6
1,648,615 + ABZR87_RS23575 0.25 -0.2
1,648,615 + ABZR87_RS23575 0.25 +0.2
1,648,616 - ABZR87_RS23575 0.26 +0.2
1,648,616 - ABZR87_RS23575 0.26 -0.2
1,648,616 - ABZR87_RS23575 0.26 +0.9
1,648,633 + ABZR87_RS23575 0.28 -0.3
1,648,633 + ABZR87_RS23575 0.28 -0.1
1,648,634 - ABZR87_RS23575 0.28 +0.2
1,648,673 - ABZR87_RS23575 0.33 -0.8
1,648,673 - ABZR87_RS23575 0.33 +0.8
1,648,732 + ABZR87_RS23575 0.40 +0.3
1,648,733 - ABZR87_RS23575 0.40 -0.4
1,648,756 + ABZR87_RS23575 0.43 +0.1
1,648,757 - ABZR87_RS23575 0.44 +0.2
1,648,757 - ABZR87_RS23575 0.44 +0.1
1,648,810 + ABZR87_RS23575 0.50 -0.2
1,648,810 + ABZR87_RS23575 0.50 -0.4
1,648,811 - ABZR87_RS23575 0.50 +0.4
1,648,811 - ABZR87_RS23575 0.50 -0.5
1,648,811 - ABZR87_RS23575 0.50 -0.9
1,648,875 - ABZR87_RS23575 0.59 -1.1
1,648,876 + ABZR87_RS23575 0.59 -0.5
1,648,876 + ABZR87_RS23575 0.59 -0.3
1,648,876 + ABZR87_RS23575 0.59 +0.4
1,648,877 - ABZR87_RS23575 0.59 +0.7
1,648,922 + ABZR87_RS23575 0.65 -1.1
1,648,922 + ABZR87_RS23575 0.65 +0.0
1,648,922 + ABZR87_RS23575 0.65 +0.1
1,648,922 + ABZR87_RS23575 0.65 +0.4
1,648,978 + ABZR87_RS23575 0.72 +0.6
1,648,978 + ABZR87_RS23575 0.72 -2.6
1,648,978 + ABZR87_RS23575 0.72 +0.1
1,648,979 - ABZR87_RS23575 0.72 -0.5
1,648,979 - ABZR87_RS23575 0.72 +0.7
1,648,979 - ABZR87_RS23575 0.72 +1.2
1,649,142 + +2.1
1,649,142 + +0.2
1,649,142 + +1.1
1,649,142 + +0.4
1,649,142 + +1.7
1,649,143 - -0.9
1,649,143 - +0.7
1,649,143 - +0.3
1,649,143 - +0.4
1,649,190 + +0.5
1,649,190 + -0.2
1,649,191 - -0.3
1,649,191 - +0.1
1,649,289 - -0.4
1,649,289 - +0.1

Or see this region's nucleotide sequence