Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16095

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16090 and ABZR87_RS16095 are separated by 55 nucleotidesABZR87_RS16095 and ABZR87_RS16100 are separated by 66 nucleotidesABZR87_RS16100 and ABZR87_RS16105 are separated by 300 nucleotides ABZR87_RS16090: ABZR87_RS16090 - NAD+ synthase, at 3,400,689 to 3,402,326 _RS16090 ABZR87_RS16095: ABZR87_RS16095 - GNAT family N-acetyltransferase, at 3,402,382 to 3,403,614 _RS16095 ABZR87_RS16100: ABZR87_RS16100 - hypothetical protein, at 3,403,681 to 3,403,872 _RS16100 ABZR87_RS16105: ABZR87_RS16105 - inorganic diphosphatase, at 3,404,173 to 3,404,700 _RS16105 Position (kb) 3402 3403 3404Strain fitness (log2 ratio) -2 -1 0 1at 3402.336 kb on - strandat 3402.336 kb on - strandat 3402.336 kb on - strandat 3402.336 kb on - strandat 3402.336 kb on - strandat 3402.336 kb on - strandat 3402.449 kb on - strandat 3402.544 kb on + strand, within ABZR87_RS16095at 3402.670 kb on + strand, within ABZR87_RS16095at 3402.670 kb on + strand, within ABZR87_RS16095at 3402.671 kb on - strand, within ABZR87_RS16095at 3402.671 kb on - strand, within ABZR87_RS16095at 3402.698 kb on - strand, within ABZR87_RS16095at 3402.698 kb on - strand, within ABZR87_RS16095at 3402.698 kb on - strand, within ABZR87_RS16095at 3402.727 kb on + strand, within ABZR87_RS16095at 3402.727 kb on + strand, within ABZR87_RS16095at 3402.728 kb on - strand, within ABZR87_RS16095at 3402.728 kb on - strand, within ABZR87_RS16095at 3402.728 kb on - strand, within ABZR87_RS16095at 3402.748 kb on + strand, within ABZR87_RS16095at 3402.748 kb on + strand, within ABZR87_RS16095at 3402.748 kb on + strand, within ABZR87_RS16095at 3403.138 kb on + strand, within ABZR87_RS16095at 3403.150 kb on + strand, within ABZR87_RS16095at 3403.175 kb on - strand, within ABZR87_RS16095at 3403.312 kb on + strand, within ABZR87_RS16095at 3403.312 kb on + strand, within ABZR87_RS16095at 3403.312 kb on + strand, within ABZR87_RS16095at 3403.312 kb on + strand, within ABZR87_RS16095at 3403.312 kb on + strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.313 kb on - strand, within ABZR87_RS16095at 3403.370 kb on - strand, within ABZR87_RS16095at 3403.370 kb on - strand, within ABZR87_RS16095at 3403.370 kb on - strand, within ABZR87_RS16095at 3403.372 kb on + strand, within ABZR87_RS16095at 3403.372 kb on + strand, within ABZR87_RS16095at 3403.372 kb on + strand, within ABZR87_RS16095at 3403.373 kb on - strand, within ABZR87_RS16095at 3403.388 kb on - strand, within ABZR87_RS16095at 3403.388 kb on - strand, within ABZR87_RS16095at 3403.388 kb on - strand, within ABZR87_RS16095at 3403.558 kb on + strandat 3403.559 kb on - strandat 3403.559 kb on - strandat 3403.559 kb on - strandat 3403.682 kb on + strandat 3403.682 kb on + strandat 3403.682 kb on + strandat 3403.878 kb on + strandat 3403.879 kb on - strandat 3403.912 kb on + strandat 3403.912 kb on + strandat 3403.913 kb on - strandat 3403.913 kb on - strandat 3403.950 kb on - strandat 3403.950 kb on - strandat 3403.981 kb on - strandat 3403.981 kb on - strandat 3403.984 kb on + strandat 3404.018 kb on + strandat 3404.018 kb on + strandat 3404.018 kb on + strandat 3404.018 kb on + strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.019 kb on - strandat 3404.164 kb on + strandat 3404.165 kb on - strandat 3404.174 kb on + strandat 3404.174 kb on + strandat 3404.174 kb on + strandat 3404.175 kb on - strandat 3404.175 kb on - strandat 3404.181 kb on + strandat 3404.181 kb on + strandat 3404.182 kb on - strandat 3404.182 kb on - strandat 3404.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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3,402,336 - +0.9
3,402,336 - -0.5
3,402,336 - -0.1
3,402,336 - -0.3
3,402,336 - -0.5
3,402,336 - -0.3
3,402,449 - +1.0
3,402,544 + ABZR87_RS16095 0.13 +0.7
3,402,670 + ABZR87_RS16095 0.23 +0.2
3,402,670 + ABZR87_RS16095 0.23 +0.1
3,402,671 - ABZR87_RS16095 0.23 -0.6
3,402,671 - ABZR87_RS16095 0.23 +0.3
3,402,698 - ABZR87_RS16095 0.26 -0.3
3,402,698 - ABZR87_RS16095 0.26 +0.9
3,402,698 - ABZR87_RS16095 0.26 +1.2
3,402,727 + ABZR87_RS16095 0.28 +0.3
3,402,727 + ABZR87_RS16095 0.28 +0.1
3,402,728 - ABZR87_RS16095 0.28 -0.2
3,402,728 - ABZR87_RS16095 0.28 +0.4
3,402,728 - ABZR87_RS16095 0.28 -0.5
3,402,748 + ABZR87_RS16095 0.30 +1.6
3,402,748 + ABZR87_RS16095 0.30 +0.1
3,402,748 + ABZR87_RS16095 0.30 -0.4
3,403,138 + ABZR87_RS16095 0.61 -1.4
3,403,150 + ABZR87_RS16095 0.62 +0.3
3,403,175 - ABZR87_RS16095 0.64 -0.1
3,403,312 + ABZR87_RS16095 0.75 -0.5
3,403,312 + ABZR87_RS16095 0.75 -0.5
3,403,312 + ABZR87_RS16095 0.75 +0.3
3,403,312 + ABZR87_RS16095 0.75 +0.4
3,403,312 + ABZR87_RS16095 0.75 -0.2
3,403,313 - ABZR87_RS16095 0.76 -0.5
3,403,313 - ABZR87_RS16095 0.76 -1.7
3,403,313 - ABZR87_RS16095 0.76 -0.6
3,403,313 - ABZR87_RS16095 0.76 -0.0
3,403,313 - ABZR87_RS16095 0.76 +0.5
3,403,313 - ABZR87_RS16095 0.76 +1.2
3,403,313 - ABZR87_RS16095 0.76 +0.8
3,403,313 - ABZR87_RS16095 0.76 +0.3
3,403,370 - ABZR87_RS16095 0.80 +0.3
3,403,370 - ABZR87_RS16095 0.80 -0.7
3,403,370 - ABZR87_RS16095 0.80 +0.1
3,403,372 + ABZR87_RS16095 0.80 +0.3
3,403,372 + ABZR87_RS16095 0.80 -0.3
3,403,372 + ABZR87_RS16095 0.80 -0.2
3,403,373 - ABZR87_RS16095 0.80 +0.1
3,403,388 - ABZR87_RS16095 0.82 +0.1
3,403,388 - ABZR87_RS16095 0.82 +0.9
3,403,388 - ABZR87_RS16095 0.82 +0.5
3,403,558 + -0.1
3,403,559 - -0.3
3,403,559 - +0.4
3,403,559 - +0.7
3,403,682 + -0.8
3,403,682 + -0.2
3,403,682 + +0.1
3,403,878 + -0.1
3,403,879 - -0.9
3,403,912 + -0.1
3,403,912 + -0.4
3,403,913 - -0.7
3,403,913 - +0.1
3,403,950 - +0.8
3,403,950 - -0.5
3,403,981 - -1.4
3,403,981 - +0.2
3,403,984 + +1.2
3,404,018 + +0.9
3,404,018 + -0.2
3,404,018 + -2.2
3,404,018 + +0.3
3,404,019 - -0.9
3,404,019 - +0.2
3,404,019 - +0.2
3,404,019 - -0.1
3,404,019 - -0.8
3,404,019 - +0.2
3,404,019 - -0.5
3,404,019 - -0.4
3,404,019 - +0.1
3,404,019 - -1.1
3,404,019 - -0.3
3,404,019 - -0.5
3,404,164 + +0.4
3,404,165 - +0.2
3,404,174 + -0.1
3,404,174 + -0.4
3,404,174 + -0.3
3,404,175 - -1.4
3,404,175 - +0.8
3,404,181 + +0.5
3,404,181 + +1.2
3,404,182 - -0.1
3,404,182 - +0.7
3,404,182 - +0.0

Or see this region's nucleotide sequence