Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12575 and ABZR87_RS12580 are separated by 58 nucleotides ABZR87_RS12580 and ABZR87_RS12585 are separated by 39 nucleotides
ABZR87_RS12575: ABZR87_RS12575 - acetyl-CoA C-acyltransferase, at 2,661,821 to 2,662,999
_RS12575
ABZR87_RS12580: ABZR87_RS12580 - bifunctional nicotinamidase/pyrazinamidase, at 2,663,058 to 2,663,699
_RS12580
ABZR87_RS12585: ABZR87_RS12585 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 2,663,739 to 2,665,820
_RS12585
Position (kb)
2663
2664 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2662.495 kb on - strand, within ABZR87_RS12575 at 2662.781 kb on + strand, within ABZR87_RS12575 at 2662.782 kb on - strand, within ABZR87_RS12575 at 2662.782 kb on - strand, within ABZR87_RS12575 at 2662.782 kb on - strand, within ABZR87_RS12575 at 2662.782 kb on - strand, within ABZR87_RS12575 at 2662.966 kb on + strand at 2662.966 kb on + strand at 2662.967 kb on - strand at 2663.015 kb on - strand at 2663.051 kb on + strand at 2663.051 kb on + strand at 2663.282 kb on - strand, within ABZR87_RS12580 at 2663.332 kb on + strand, within ABZR87_RS12580 at 2663.333 kb on - strand, within ABZR87_RS12580 at 2663.354 kb on - strand, within ABZR87_RS12580 at 2663.354 kb on - strand, within ABZR87_RS12580 at 2663.354 kb on - strand, within ABZR87_RS12580 at 2663.555 kb on + strand, within ABZR87_RS12580 at 2663.555 kb on + strand, within ABZR87_RS12580 at 2663.556 kb on - strand, within ABZR87_RS12580 at 2663.556 kb on - strand, within ABZR87_RS12580 at 2663.748 kb on - strand at 2663.812 kb on + strand at 2663.851 kb on + strand at 2663.852 kb on - strand at 2663.852 kb on - strand at 2663.872 kb on + strand at 2663.873 kb on - strand at 2663.920 kb on + strand at 2663.921 kb on - strand at 2664.121 kb on + strand, within ABZR87_RS12585 at 2664.121 kb on + strand, within ABZR87_RS12585 at 2664.121 kb on + strand, within ABZR87_RS12585 at 2664.121 kb on + strand, within ABZR87_RS12585 at 2664.122 kb on - strand, within ABZR87_RS12585 at 2664.122 kb on - strand, within ABZR87_RS12585 at 2664.194 kb on - strand, within ABZR87_RS12585 at 2664.343 kb on - strand, within ABZR87_RS12585 at 2664.343 kb on - strand, within ABZR87_RS12585 at 2664.350 kb on - strand, within ABZR87_RS12585 at 2664.367 kb on + strand, within ABZR87_RS12585 at 2664.367 kb on + strand, within ABZR87_RS12585 at 2664.367 kb on + strand, within ABZR87_RS12585 at 2664.368 kb on - strand, within ABZR87_RS12585 at 2664.368 kb on - strand, within ABZR87_RS12585 at 2664.368 kb on - strand, within ABZR87_RS12585 at 2664.654 kb on + strand, within ABZR87_RS12585 at 2664.654 kb on + strand, within ABZR87_RS12585 at 2664.655 kb on - strand, within ABZR87_RS12585
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 2,662,495 - ABZR87_RS12575 0.57 -0.7 2,662,781 + ABZR87_RS12575 0.81 -0.2 2,662,782 - ABZR87_RS12575 0.82 -2.3 2,662,782 - ABZR87_RS12575 0.82 -1.2 2,662,782 - ABZR87_RS12575 0.82 -0.2 2,662,782 - ABZR87_RS12575 0.82 -1.4 2,662,966 + +0.3 2,662,966 + -0.2 2,662,967 - -0.8 2,663,015 - -0.0 2,663,051 + +0.7 2,663,051 + +0.7 2,663,282 - ABZR87_RS12580 0.35 -0.7 2,663,332 + ABZR87_RS12580 0.43 -0.3 2,663,333 - ABZR87_RS12580 0.43 +1.1 2,663,354 - ABZR87_RS12580 0.46 +0.1 2,663,354 - ABZR87_RS12580 0.46 -0.8 2,663,354 - ABZR87_RS12580 0.46 -0.3 2,663,555 + ABZR87_RS12580 0.77 +0.7 2,663,555 + ABZR87_RS12580 0.77 +0.0 2,663,556 - ABZR87_RS12580 0.78 -0.2 2,663,556 - ABZR87_RS12580 0.78 -0.5 2,663,748 - -0.2 2,663,812 + -2.8 2,663,851 + -3.1 2,663,852 - -4.6 2,663,852 - -4.8 2,663,872 + -3.3 2,663,873 - -4.0 2,663,920 + -2.2 2,663,921 - -3.5 2,664,121 + ABZR87_RS12585 0.18 -3.1 2,664,121 + ABZR87_RS12585 0.18 -3.1 2,664,121 + ABZR87_RS12585 0.18 -3.7 2,664,121 + ABZR87_RS12585 0.18 -2.1 2,664,122 - ABZR87_RS12585 0.18 -1.6 2,664,122 - ABZR87_RS12585 0.18 -4.7 2,664,194 - ABZR87_RS12585 0.22 -2.5 2,664,343 - ABZR87_RS12585 0.29 -3.4 2,664,343 - ABZR87_RS12585 0.29 -2.9 2,664,350 - ABZR87_RS12585 0.29 -3.3 2,664,367 + ABZR87_RS12585 0.30 -4.6 2,664,367 + ABZR87_RS12585 0.30 -3.7 2,664,367 + ABZR87_RS12585 0.30 -3.3 2,664,368 - ABZR87_RS12585 0.30 -2.9 2,664,368 - ABZR87_RS12585 0.30 -2.5 2,664,368 - ABZR87_RS12585 0.30 -3.4 2,664,654 + ABZR87_RS12585 0.44 -4.5 2,664,654 + ABZR87_RS12585 0.44 -3.3 2,664,655 - ABZR87_RS12585 0.44 -1.5
Or see this region's nucleotide sequence